Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04161 ATGCAGAGATCAGGATATAGTGAGGAGGATGGAATATACAGGTCCCTGAGGCCTTCCCTAGTGCTTCCAAAGGAACAAAACCTCTCTTTAGTCTCATTCCTTTTCTCAAGCGTCTCTTCTTTCCCAACCAAACCCGCCCTTATTGACGCTGACTCTTCCAAAACCCTTTCCTTCGCTCAACTTAAAATCCAAGTCGCCAAACTCGCCCATGCTTTTCTCCTCCTCGGCATCAACAAAAACGACGTCGTTCTCCTCCTCACTCCCAACACCATCCATTTCCCCATATGCTTCCTCGCCGCAACCGCCATCGGCGCCGTCGTCTCCACCGCCAACCCTATTTACACCGTCGCGGAAATCTCCAGACAAGTCAACGACTCCAAACCGAAGCTGGTTATCACAGTCCCTGAATTATGGGACAAAGTGAAGGGCTTCAACCTCTCTGCAGTCATAATCGGTTCTGTGAACGACACGAGTTCGAAGGTCACGAGTTTCAACGCGTTGATGGAGCTGGCAGGGTCCGTTACAGAGTTGCCGAAAAACGACGTAAAGCAGGGCGATACGGCGGTGCTTTTATACTCTTCGGGCACCACGGGAGTAAGCAAGGGGGTGGTACTCACTCACGGGAACTTCATCGCGGCGTCGCTAATGGTAGCCATGGACGACGATTTGGCTGGGGAGTTTCACAGCGTGTTCCTCTGCGTTTTGCCAATGTTTCATGTCTTTGGGCTGTCGATCATCGTTTACTCGCAGCTCCGGCGAGGGAGTGGGGTCGTGTCAATGGCGAGGTTCGAGTTGGAGGCGTTTCTGAAGGCAATTGAGAAGCACAGAGTGACGAACCTGTGGCTGGTGCCTCCAATCGTCCTTGCTCTGGCGAAACAGAGTGTGGTTAGTAACTATGATCTTTCGTCGTTGAAGCGTATTGGGTCTGGTGCTGCTCCTCTTGGAAAAGAATTGATGGAGGAGTGTGCTAAACGTTTGCCTCATGTTACCGTTTTTCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGATTCGTCATACTGGTTCAACTGGAATGCTGGTTTCAGGAGTGGAAGCTCAAATAGTGTCTGTGAATACACAGAAGCCGCTCCCTCCGAGACAATTGGGGGAATTATGGATTCGGGGTCCTAACATGATGCAAGGTTATCATAAAAATCCAGAGGCCACAAGATCGACTTTAGATGAGAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTCTATGTTGTTGACCGTATCAAAGAGCTTATCAAGTATAAAGGATTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCATTTCTCACCCTGAAATCCTAGATGCCGTTGTCGTCCCATATCCGGATGATGAGGCTGGTGAGGTTCCACTTGCTTATGTTGTTCGTTCACCCAACAGTTCACTTACTGAAGAAGAAATTAAGAAATTTATTGCTAATCAGGTAAGAGAAAGATAA 1521 0.4865 MQRSGYSEEDGIYRSLRPSLVLPKEQNLSLVSFLFSSVSSFPTKPALIDADSSKTLSFAQLKIQVAKLAHAFLLLGINKNDVVLLLTPNTIHFPICFLAATAIGAVVSTANPIYTVAEISRQVNDSKPKLVITVPELWDKVKGFNLSAVIIGSVNDTSSKVTSFNALMELAGSVTELPKNDVKQGDTAVLLYSSGTTGVSKGVVLTHGNFIAASLMVAMDDDLAGEFHSVFLCVLPMFHVFGLSIIVYSQLRRGSGVVSMARFELEAFLKAIEKHRVTNLWLVPPIVLALAKQSVVSNYDLSSLKRIGSGAAPLGKELMEECAKRLPHVTVFQGYGMTETCGIVSVENPRVGIRHTGSTGMLVSGVEAQIVSVNTQKPLPPRQLGELWIRGPNMMQGYHKNPEATRSTLDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPLAYVVRSPNSSLTEEEIKKFIANQVRER. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04161 506 Pfam AMP-binding enzyme C-terminal domain 450 503 IPR025110 -
Seca4g04161 506 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Seca4g04161 506 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 503 - -
Seca4g04161 506 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 436 - -
Seca4g04161 506 Pfam AMP-binding enzyme 37 441 IPR000873 -
Seca4g04161 506 CDD 4CL 42 503 - -
Seca4g04161 506 Gene3D - 437 506 IPR045851 -
Seca4g04161 506 SUPERFAMILY Acetyl-CoA synthetase-like 22 503 - -
Seca4g04161 506 Gene3D - 10 436 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04161 Seca-Chr4 74715445 74719343 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04161 1 503 Monolignol Biosynthesis Gene Families AT4G05160 67.583 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04161 K01904 - gmx:100808944 792.341