Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04160 ATGCAGAGATCCGGTTACGGTCAGGATGGAATATACAGGTCCCTAAGGCCTTCCCTGGTGTTCCCCAAGGACCCTAACCTCTCCTTAGTCTCATTCCTCTTCTCTACCGTCTCCTCTTTCCACACCAAACCCGCCCTCATTGACGCCGATTCCTCCCAAACCCTTTCTTTCGCCCAACTTAAAATCCAAGTCGCCAAACTCGCTCGCGGTTTCCTCCACCTCGGCATCACCAAAAACGACGTCGTCCTCCTCCTCGCCCCCAACAGCATCCACTTCCCCATATGCTTCCTCGCCGCAACTGCCATTGGAGCCATCGTTTCTACCGCCAATCCCATTTACACCGTTGCTGAACTCTCAAGACAAGTCAACGACTCCAACCCCAAGCTGGTTATCACAATCCCCGAATTATGGAACAAAGTGAAAGGTTTCAACCTCCCCGCAGTGATCATCGGTTCTGAGAACGCCACGTGTTCAAAGATCACGAGTTTCAACGCGTTGTTGGAAGAGGCAAGGTCCGTTACAGAGTTGCCGGAAAACGATGTGAAGCAGGGCGATACGGCGGTGCTTTTATACTCGTCGGGGACCACAGGGTTGAGCAAGGGGGTGGTACTCACGCACGGGAATTTCATTGCGGCGTCGCTGATGATGAGCATGGACGACGATTATGCAGGGGAGTTTGACAGCGTGTTCCTCTGCGTTTTGCCGATGTTTCACCTATTTGGGCTTGGCATGGTGGTTTACACGCAGCTAAGGCGAGGGAGCGCGGTGGTGTCGTTGGGGAGGTTCGAGTTGGGGGCGTTTCTAAAGGCAATTGAGAAGCACAGGGTGACGAATCTGTGGTTGGTGCCTCCCATCGTGCTTGCTCTGGCGAAACAGAGTGTGGTTAGCAAGTACGATCTTTCGTCGTTGAAGTATATTGGGTCTGGTGCTGCTCCTCTCGGGAAAGAATTGATGGAGGAGTGTGCCAGGCGTTTCCCTCATGTTACTGTTTTTCAGGAAGCAAGATTTGTTGAACAACACTTTTGGCTATATGCATATTGCTTAAAACCAATGTGTTGA 1059 0.5184 MQRSGYGQDGIYRSLRPSLVFPKDPNLSLVSFLFSTVSSFHTKPALIDADSSQTLSFAQLKIQVAKLARGFLHLGITKNDVVLLLAPNSIHFPICFLAATAIGAIVSTANPIYTVAELSRQVNDSNPKLVITIPELWNKVKGFNLPAVIIGSENATCSKITSFNALLEEARSVTELPENDVKQGDTAVLLYSSGTTGLSKGVVLTHGNFIAASLMMSMDDDYAGEFDSVFLCVLPMFHLFGLGMVVYTQLRRGSAVVSLGRFELGAFLKAIEKHRVTNLWLVPPIVLALAKQSVVSKYDLSSLKYIGSGAAPLGKELMEECARRFPHVTVFQEARFVEQHFWLYAYCLKPMC. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04160 352 Gene3D - 9 338 IPR042099 -
Seca4g04160 352 Pfam AMP-binding enzyme 37 329 IPR000873 -
Seca4g04160 352 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 332 - -
Seca4g04160 352 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Seca4g04160 352 SUPERFAMILY Acetyl-CoA synthetase-like 18 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04160 Seca-Chr4 74707510 74709303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04160 1 332 Monolignol Biosynthesis Gene Families AT4G05160 61.834 3.32e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04160 K01904 - gmx:100808944 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04160 4 74707510 74709303 Seca4g04160 4 74707510 74709303 ECH