Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04154 ATGTCTCACCAGGGCGAATCGTCGGACTCGAAATCGGGGAAGAAAGATTTCTCGACGGCGATTCTAGAGCGGAAAAAGTCGCCGAACCGGTTAATCGTGGATGAGGCCGTCAACGACGACAACTCAGTGGTTTCCATGCACCCTGATACCATGGAAAAGCTCCAGCTTTTCCGGGGCGACACTATCCTCATCAAGGGCAAGAAGCGGAAGGATACGGTTTGCATAGCTCTTGCTGATGAGACTTGTGAGGAGCCCAAGATTAGGATGAACAAAGTCGTGAGGTCAAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCTGATGTCAAGTATGGGAAACGCGTTCACATTTTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTCCTTGACGCTTACTTGAAACCTTATTTCCTGGAGGCTTATCGTCCAGTCAGAAAAGGAGATCTGTTTCTTGTCCGAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAATATTGTGTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAAAAGGGAGGATGAAGAAAGGCTTGATGAAGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAATTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGCTCTGGGAAGACTTTAATAGCCAGAGCTGTTGCTAATGAAACAGGAGCGTTCTTCTTTTGTATTAATGGGCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCTCCCTCCATCATATTTATTGATGAGATTGATTCTATTGCACCCAAGCGAGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTAACTCTTATGGATGGACTGAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATTCATACCAAAAACATGAAACTTTCTGATGATGTTGATTTAGAGAGAATTTCCAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGTATTAGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGACTATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCAGACTGCTCTAGGAACAAGCAATCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTACGGCCCTCCAGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAGTTGCTTACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTCGACTCCATTGCCACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGACCCAGCACTTCTTCGTCCTGGACGTCTGGATCAATTGATCTATATTCCCCTTCCTGATGAGGAGTCCCGTTATCAGATCTTCAAGGCCTGCATGCGAAAGTCACCTGTCTCAAAAGATGTTGATTTGAGTGCGCTAGCTAAGTACACTCAAGGTTTCAGCGGTGCTGATATAACAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGAGAGAGGAAGAGAAGAGAAAACCCTGAGGCCATGGATGAAGACATTGAGGAAGATGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTATGCACGCAGGAGTGTTAGTGATGCTGATATCCGCAAATACCAGGCATTTGCTCAGACCTTGCAGCAATCCCGTGGCTTTGGAACTGAATTTAGGTTTCCAGAGACTGAAGGTAGGAGCACTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCTGATGACGATGATCTATATAGTTAG 2418 0.4491 MSHQGESSDSKSGKKDFSTAILERKKSPNRLIVDEAVNDDNSVVSMHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLLDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKDVDLSALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRRENPEAMDEDIEEDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPETEGRSTGSDPFATSAAGADDDDLYS. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04154 805 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Seca4g04154 805 SUPERFAMILY ADC-like 26 110 IPR009010 -
Seca4g04154 805 Gene3D - 655 763 - -
Seca4g04154 805 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Seca4g04154 805 FunFam Cell division control 48 113 209 - -
Seca4g04154 805 Gene3D - 113 209 - -
Seca4g04154 805 SMART CDC48_N_2 30 113 IPR003338 -
Seca4g04154 805 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Seca4g04154 805 CDD RecA-like_CDC48_r2-like 489 649 - -
Seca4g04154 805 NCBIfam CDC48 family AAA ATPase 31 767 IPR005938 GO:0016787
Seca4g04154 805 SMART CDC48_2_2 130 196 IPR004201 -
Seca4g04154 805 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Seca4g04154 805 Gene3D - 376 467 - -
Seca4g04154 805 Pfam AAA+ lid domain 397 439 IPR041569 -
Seca4g04154 805 Pfam AAA+ lid domain 673 714 IPR041569 -
Seca4g04154 805 Gene3D - 7 112 - -
Seca4g04154 805 PANTHER AAA-FAMILY ATPASE 402 769 - -
Seca4g04154 805 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Seca4g04154 805 CDD RecA-like_CDC48_r1-like 209 374 - -
Seca4g04154 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Seca4g04154 805 FunFam Transitional endoplasmic reticulum ATPase 468 651 - -
Seca4g04154 805 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Seca4g04154 805 FunFam Cell division control 48 376 467 - -
Seca4g04154 805 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Seca4g04154 805 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Seca4g04154 805 Gene3D - 468 651 IPR027417 -
Seca4g04154 805 SMART AAA_5 241 377 IPR003593 GO:0016887
Seca4g04154 805 SMART AAA_5 514 653 IPR003593 GO:0016887
Seca4g04154 805 Gene3D - 210 374 IPR027417 -
Seca4g04154 805 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Seca4g04154 805 MobiDBLite consensus disorder prediction 770 805 - -
Seca4g04154 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 764 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04154 Seca-Chr4 74472512 74477875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04154 447 710 Calmodulin-binding Proteins AT3G56690 48.106 1.36e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04154 K13525 - tcc:18590940 1520.37