Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04146 ATGGCTGAGATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGCAGGGAGCAAACCTTCATATCTTCAGTTGCTTCCCCAGTGGTCCCAACTGATACCACTGCCAAATTTGCTTTGCCTGTAGATTCTGAGCATAAAGCCAAGGTTTTTAAACTGTTTTCCATGGCCAATCCCCACATGAGAACCTTCCACTTATCTTGGATATCCTTCTTCACTTGCTTTGTCTCAACCTTCGCAGCAGCTCCTCTTGTCCCCATCATTCGTGACAACCTCAACCTCACTAAAAGTGACATTGGCAATGCTGGTGTTGCCTCTGTGTCTGGCAGTATTTTCTCCAGGCTTGCAATGGGTGCAGTTTGTGACCTCTTAGGCCCACGTTATGGCTGTGCCTTCCTTATCATGCTCTCTGCCCCAACTGTGTTCTGCATGTCATTTGTGAAAGATGCTGCAGGCTATATAGCAGTTCGGTTCATGATTGGGTTCTCGTTGGCCACATTTGTTTCATGCCAATACTGGATGAGCACAATGTTTAACAGTAAGATAATAGGGCTTGTGAATGGAACAGCAGCTGGGTGGGGTAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCATTGGTCTATGAATTGATCAGGCGAGTTGGGGCTACTCCCTTCACTGCATGGAGGATTGCCTTCTTCATCCCTGGTTGGTTGCATGTCATCATGGGTATCCTTGTCTTAACCCTTGGCCAAGATTTACCTGATGGCAACCTTGGTGCCTTACAGAAGAAGGGTGATGTTGCTAAAGACAAGTTCTCCAAGGTTGTGTTATGGTATGCCATAACAAATTACAGGACATGGATATTTGCCCTCCTCTATGGCTACTCTATGGGAGTTGAATTGACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTGCACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAACCTTGTTGCTCGCCCCTTTGGTGGATATGCCTCTGATGTTGCAGCTCGGTTGTTTGGCATGAGAGGTAGGCTTTGGACCCTCTGGATCCTTCAAACCCTTGGAGGGGTTTTCTGTATATGGCTTGGCCGTGCCAATTCCCTTCCAATTGCGGTCTTGGCCATGATCCTGTTCTCTATTGGAGCTCAAGCTGCTTGTGGTGCAACTTTTGGAATTATTCCTTTTATCTCAAGGAGGTCTCTGGGGATCATATCAGGTCTAACTGGTGCAGGTGGTAACTTTGGGTCTGGATTGACCCAGTTGATCTTCTTTTCAACCAACAAATTCTCCACATCCACAGGTCTATCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAAGACATCAACAAATCCACTGAAGAATACTATTACACCGCTGAATGGAACGAGGATGAGAAGAAGAAGGGCTTGCACCAGCAGAGTCTCAAGTTTGCAGAGAATAGTCGCTCAGAGAGAGGCAAGCGTGTGGCCTCTGCACCAACACCACCAAATGCAACTCCCATACATGTTTAA 1596 0.4699 MAEIEGSPGSSMHGVTGREQTFISSVASPVVPTDTTAKFALPVDSEHKAKVFKLFSMANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRVGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGDVAKDKFSKVVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTNKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDINKSTEEYYYTAEWNEDEKKKGLHQQSLKFAENSRSERGKRVASAPTPPNATPIHV. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04146 531 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 459 IPR020846 GO:0022857
Seca4g04146 531 MobiDBLite consensus disorder prediction 493 531 - -
Seca4g04146 531 FunFam Nitrate transporter 2.1 265 467 - -
Seca4g04146 531 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Seca4g04146 531 Gene3D MFS general substrate transporter like domains 264 467 IPR036259 -
Seca4g04146 531 Gene3D MFS general substrate transporter like domains 57 253 IPR036259 -
Seca4g04146 531 CDD MFS_NRT2_like 65 459 IPR044772 GO:0015112
Seca4g04146 531 MobiDBLite consensus disorder prediction 493 514 - -
Seca4g04146 531 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 517 IPR044772 GO:0015112
Seca4g04146 531 FunFam High affinity nitrate transporter 57 254 - -
Seca4g04146 531 Pfam Major Facilitator Superfamily 69 426 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04146 Seca-Chr4 74319627 74321624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04146 1 531 Inorganic Solute Cotransporters AT5G60770 80.979 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04146 K02575 - gmx:547946 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04146 4 74319627 74321624 Seca4g04146 4 74319627 74321624 ECH
Seca4g04146 4 74319627 74321624 Seca4g04150 4 74452505 74452954 PCT