Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04138 ATGAGTTCAGAGAGTCCAGAGATGGTTCTCCCAAACTTGTCTTCTTCTTCCTCTTCTCCTTCAACCAAGCAACCCAAACCCAGGAAAACTAAGACCCCTCTCCCTCTTAAAGCCAAGCAACCTTCTATGACAGGACACAAGGACCGCCACACCAAGGTGAATGGGCGAGAACGCCGTGTTCAGTTACCACCAATGTGCGCTGCTCGCATCTTCCAACTCACCAAAGAGTTAGGCTTCAAGAATGATGGCCAGACCATTGGGTGGCTCTTAAACAAAGCTGAGCCCTCCATTATCGCTGCCACTGGCACCAGCATATTACCATCTTCCGTCGACAACTCAGACTCCGTAGCTGTTGCATCTGAAGTACCTGAACCAGTACTTGCAACTGATGAGGACAAAACTGCTGTTGATCAGGATGCAGAGGCGTTTGCCATGCCTGCAGCCATCAGCCCTGAAGAAGAGTTTGATTCAGATTTTGATTGGTTAGTAAATTATGGTGTGGAGTTGGATGCTGATGACCATGCATTGTTTTCCAATAATTCATGA 546 0.478 MSSESPEMVLPNLSSSSSSPSTKQPKPRKTKTPLPLKAKQPSMTGHKDRHTKVNGRERRVQLPPMCAARIFQLTKELGFKNDGQTIGWLLNKAEPSIIAATGTSILPSSVDNSDSVAVASEVPEPVLATDEDKTAVDQDAEAFAMPAAISPEEEFDSDFDWLVNYGVELDADDHALFSNNS. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04138 181 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 130 IPR005333 GO:0003700
Seca4g04138 181 MobiDBLite consensus disorder prediction 1 53 - -
Seca4g04138 181 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Seca4g04138 181 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g04138 181 Pfam TCP family transcription factor 45 127 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04138 Seca-Chr4 73939755 73940300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04138 15 110 TCP Transcription Factor Family AT1G69690 51.020 3.51e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g04138 TCP 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04138 - K16221 var:108322003 124.79