Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04137 ATGAATAAAAGAGAGGGACCGAATGAGAAAAAGAAGGTTGCTTTCGTTATAATTGTTGTATCATTCAGTTGCATTGTGGGGCAAGGGAATGGTGCTGATTCTGGTTCTAGCAGTGTTGGGGCTGAGATTGTCGCCCAGGAAATATACCAAAGCTTGTCCAATTATACGAAAATCTTCAGAGCTGCAATAAAAAAAGAGCTCGGTTTTTGCATAGTTGATGTGGACGCTGATTGGAATGAAGCGTTCAATTTCACCAAAGATCTAACCTTTTTGACCTTATGTGCCGCGCAAATGAAAGGGGATCTCACACAGCGCGTGTGCACAGCACCAGAATTGGAAGCGTATGCCCGAAGTTTTGCTGCAGGGGGCAAGTCAGATTCAAGCTCAAGCTCAGATTCAAGCTCAGTCTCAAGCTCAAGCAGAACCAAATCCAACTTCTTGAAGCCAAACCTAAATTGTAATTTGAGCTCATGGCTTAATGGATGTGAGCCTGGATGGGGATGTAAAGCTAATCAGAAAGTAGACATTAACAGTAACAAGAAGGAAATGCCTCTTAGGTCTACTGATTGCAAACCTTGTTGTGAAGGTTTCTTTTGCCCTCGTGGTATCACCTGCATGATACCTTGTCCTTTGGGCTCTTTTTGTCCTCGTGCGCAACTTAATAAAACTAGTGGAATATGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGGAGAAACATACTTGTGGGGGAGCAGATATATGGGCAGACATTATGAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATTCTGTCCATCTACAATCATAAAAATTCCTTGCAATAAGGGGTATTACTGCAGAACAGGTTCTACTGCTCAAGAGCGGTGTTTCAGGTTGGCAACATGTGAGCCTAAATCAGCAAATCAAAATATTACTGCATATGGTGTCCTGGTTTTTGCTGGCTTGTGTTTCCTGCTTATTATCATATACAACTGTTCTGATCAAGTTCTAGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCTCAGAGTGTAAGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACGTTGCTAAGAAGCATGCAGTAGGACTGCAATCACAATTATCACGTACATTTTCTCGCAAAAAGACTTCAAGCAAGCCAGATTTGAAAGGTTTCGGTTCTAAACATTCAGATTCTAGCTTACCACCTGTGTTGCCAGGACGTGCTAGTACATCAAAAGGAAAGAAAAAGGATAAAAGCAACCTCACAAAAATATTAAATGATATTGAGCAAGACCCTGATAGTCAAGAAGGGTTCAATGTTCAGATAGGAGATAAAAATGTCAAAAAACAAGCACCAAGGGGAAAGCAGTTGCATACTCAGAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTACAGGAACAAACTAAAAACATGACCTTCTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATAAGGAAGAGGCCTACTATTGAGGTTGCTTTTAAAGATTTAACCCTCACTTTGAAGGGGAAAAACAAACATTTATTAAGATGTGTGACTGGTAAATTATATCCTGGTCGAATTTCAGCAGTCATGGGTCCATCTGGTGCTGGTAAGACAACATTTCTCTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGCCAAGTTCTTGTAAATGGCCAGGAATCCTCTATTCGGTCATACAAGAAGATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAGAATCTGTGGTTCAGTGCCAGATGCAGACTTTCTGCTGATCTACCGAAAGAAGAGAAGGTGTTGGTGGTTGAAAGAGTTATTGAATCTTTGGGGCTGCAGGCAATAAGGGATTCTCTGGTTGGGACAGTAGAAAAGAGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAATGTAGGACTGGAAATGGTTATGGAACCTTCCCTTTTAATTTTGGATGAACCCACATCCGGTTTGGATAGTTCATCTTCTCAGTTGCTGCTTAGAGCACTTAGACGTGAGGCTCTTGAAGGAGTCAACATATGTATGGTCCTTCACCAACCTAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTGCTTGCTAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTACTTCTCAAGCATGGGGATTGTTGTCCCTGACCGTGTCAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATATTAAAACCAAGTGCAAGCTCAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTACAGAATGTTGAAGGATTGACCACCCCAAGTGGTGATGGTTCAGCACACGGAACAGCCACCACTGCACAGGATGCTGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAAAGGGACAACCTTCAACTCAACTTCTTAGCTTCAAACGATTTGTCCAATAGGACTACACCCGGTGTGCTCACACAATACAAATACTTTCTTGGAAGAGTTGGCAAGCAGAGGCTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTGCTGCTAGCTGGCCTTTGCTTAGGAACACTTGCCAAAGTGAGTGATGAAAGTTTTGGAGCAACCGGTTATACATACACTGTAATAGCAGTATCACTCCTTTCCAAGATTGCGGCTTTGAGATCATTTGCATTGGATAAGTTGCACTATTGGAGGGAAAGTGCTTCTGGGATGAGTAGCCTAGCTTACTTTCTTTCAAAGGATACAGTTGACCATTTCAGTACAATTATCAAACCTCTAGTTTATCTCTCCATGTTTTATTTCTTCAACAATCCAAGATCACCTGTCACAGATAACTACATGGTTCTGCTGTGTTTGGTGTATTGTGTCACCGGCATAGCTTATGTGTTGGCAATCTTCCTTCAACCAGGTCCAGCACAGCTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATGATAATGAAGAAGATAGCAAAATTGTGCGCTTTCTATCCGATTTGTGCTACACCAAGTGGGCTCTAGAAGCATTTGTAATATCAAATGCTAAAAGATATTCTGGAGTTTGGTTAATAAGTAGATGTGGTGCACTCTATCAAAGTGGCTATGATCTCAAACATTGGTACCGATGTTTAGTCCTCCTTATTGTGACTGGAATAATTAGTCGAATGCTGGCATTTTTTTGTATGATAACCTTCCAGAAGAAATAG 3360 0.4134 MNKREGPNEKKKVAFVIIVVSFSCIVGQGNGADSGSSSVGAEIVAQEIYQSLSNYTKIFRAAIKKELGFCIVDVDADWNEAFNFTKDLTFLTLCAAQMKGDLTQRVCTAPELEAYARSFAAGGKSDSSSSSDSSSVSSSSRTKSNFLKPNLNCNLSSWLNGCEPGWGCKANQKVDINSNKKEMPLRSTDCKPCCEGFFCPRGITCMIPCPLGSFCPRAQLNKTSGICEPYRYQLPPGKEKHTCGGADIWADIMSSSEVFCSAGSFCPSTIIKIPCNKGYYCRTGSTAQERCFRLATCEPKSANQNITAYGVLVFAGLCFLLIIIYNCSDQVLATRERRQAKSRERAAQSVRESQAREKWKSAKDVAKKHAVGLQSQLSRTFSRKKTSSKPDLKGFGSKHSDSSLPPVLPGRASTSKGKKKDKSNLTKILNDIEQDPDSQEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALQEQTKNMTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRISAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGIVVPDRVNPPDYYIDILEGILKPSASSGVNYKQLPVRWMLHNGYPVPMDMLQNVEGLTTPSGDGSAHGTATTAQDAEAPSFAGELWQDVKCNVEMKRDNLQLNFLASNDLSNRTTPGVLTQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFALDKLHYWRESASGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSPVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYDNEEDSKIVRFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALYQSGYDLKHWYRCLVLLIVTGIISRMLAFFCMITFQKK. 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04137 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 749 IPR027417 -
Seca4g04137 1119 MobiDBLite consensus disorder prediction 121 144 - -
Seca4g04137 1119 SMART AAA_5 536 737 IPR003593 GO:0016887
Seca4g04137 1119 MobiDBLite consensus disorder prediction 122 144 - -
Seca4g04137 1119 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 466 1106 - -
Seca4g04137 1119 ProSitePatterns ABC transporters family signature. 651 665 IPR017871 GO:0005524|GO:0016887
Seca4g04137 1119 FunFam ABC transporter G family member 24 504 746 - -
Seca4g04137 1119 CDD ABCG_EPDR 508 734 - -
Seca4g04137 1119 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Seca4g04137 1119 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 510 751 IPR003439 GO:0005524
Seca4g04137 1119 Pfam ABC transporter 530 679 IPR003439 GO:0005524
Seca4g04137 1119 MobiDBLite consensus disorder prediction 341 424 - -
Seca4g04137 1119 Pfam ABC-2 type transporter 708 1119 IPR043926 GO:0140359
Seca4g04137 1119 MobiDBLite consensus disorder prediction 341 367 - -
Seca4g04137 1119 Gene3D - 499 748 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04137 Seca-Chr4 73929834 73935984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04137 537 732 Calmodulin-binding Proteins AT2G36910 29.302 3.25e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04137 - - gmx:100809312 1892.09