Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04134 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCACAACAACTTCGGCGTGACAAATTGAGGATCCAGCATTTGCAAGAGTTCCCTAACAACCTCGAACAACTATCATTACACCCAGGGTTCAACTTAGATCTTCTTCAAGTCAGGAACGTTAGAAATGGCGGCAACATGCTTGATGAGCCACCACCTCTTTATCCATCGGAAATGATAACTTCTTTTTCATCCACGCCGTCCAATCCTTTATCTGTTGTTCCTCCTAGGAACACGTTCGAGCCTCAACCTGAACCTGAACCCACTAGGCTAATGATGCCTCCTCCTTCTCACCACCATCACTATGGTTCATTTCCCCATTCATCTTCCACCAGCAATATTCATTCCTCCCCAAAAGAACACTTGGGTAATTGGAGAAACAGTGGCCCCCATCAAGTCTCTGATTGGATGGTGAATTATACAAACACTTCTTCTGTGGCTAATGAAAGCAACCCCAACTCTTTCTTGGCTTCTGAGCTCAATAATGTGCCTCCTACTCCTACTACTAGTAACCATCACTATGGGAAGCCTAGCTGTAATGTTAATGTACTCACGGATGTACAGTCTTCTCCTCTACCTCCACTTTACCACAATGCTTTGCAGGATATTTTCAAGTCTCCTAATGCTCATGGCTCAGAAATGGCTTCCCTCATCCAACATGGGATTTGGGGAGGGAATAGTACTAATGAGCCATTGCTTCATGGAGATGATCAGTTTCGTTTTGGAAATGCTAATTTGTGGACAAATCGTGGTGTTGGAAATACTACTACTACTACTACTCCCTTGGGTTTCATTGACAAAAAGATTAGTAATGAATTACAAAACACTGGCCATGTTTTGAGTGATTGCAACCCTCAGGGTCTATCCTTGTCACTTTCATCAAATTCACAATCCAAGCCTTCTCATTTTGAAGAAGGGACTGCAACTGCAACAGCAACAGATGACCCTCAATATTCAAAGTCTTTGAATGTGAAATCTATCATGAAGCCATCTATAGTTTCTAGAGATTGTGGGAAATCACTCCATCAAGACCCCTTGGGAACACCTTCTGGTTATCGAAATGTTGGTCCACTTGGTCCCTTCACTGGGTATGCTACCATTCTGAAGAGTTCAAGGTTCTTGAAGCCTTGCAAACAGCTGTTAGATGAATGCTGCCGTCAATGTGGGAAAAAATTTGGGAAATCTTGTGATGTTCCAGAATGGGTGTCTAGAGAAGTCAGTGTAATTTCTACTTCTGCTGCTGAAAGTGGGGTTGCAGCAAAAGGTGGTAGTAATTCAGGTGGTTCATCCTCTATGTTGTATGTTTCAAAGGAAAATAGTGGTGATGGCGGAGCCGGGAGCAGTAGTGACTTTTGTCTTTCTTCTCGGCCGGAGTGCCAAAAGAATAAGGCAAAACTACTGTACATGCAAGAGGAGGTTAGTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCCTTTGAGTCAGTAGCGGGTCTTAGCTCTGCTACTCCTTACGTTTCCTTGGCTCTCAAGTCAGTATCAAGACACTTCAGGTGCCTAAAAAATGCTATCTTAGATCAACTCAAGCTTACATGTGAAGTATTGGGAGAGGACTTCTCAGTTATACCAGCCACAAGTCCTAGTAGCAATAAAATTGACAATAATATTGCAAGGCTAAGGTGCATGGATCAAAGCTATCAGAAGAACAAATCTGGAGGGGGTAACATAGACTTTCTTGAATCCCAACAACATGTATGGAGGCCCCAGAGAGGGTTACCAGAACGTTCAGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTCCTTCATCCGTACCCCACGGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCATGACAGAAGCCCACAAGAACGAGGGAGCTTCTGCCTCTGAAGGTAGTAGTAGCCATCAGCCTAGAGTTGATCAGCCAGTGAGCAAATTCGTTGGTACGCATTCAATCACTGAAAAACAATTTCAGTGTTTGGAAATGGGGTCATCCTCAGCAGGCACCAATGAGGAAAAAGGAACAAATGATGAACAGTGGAATCAAGAAAAGAGGTCTAAATTAGAATGTGAGATTACACCAAGCATGGATGGAACAATGATGGGCTTTATGCCATACCGACGTGGTGGGCTTGAGGTTGGGGGACTTGGTTCTGTGTCACTAACTTTGGGCCTTAGGCACGGTGTTGAAGGTGTACAACACCAGCAGTTACAGCACGAAGAGGATTTTAGGCGTCAATTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2421 0.4362 MSSLRPELHVAQQLRRDKLRIQHLQEFPNNLEQLSLHPGFNLDLLQVRNVRNGGNMLDEPPPLYPSEMITSFSSTPSNPLSVVPPRNTFEPQPEPEPTRLMMPPPSHHHHYGSFPHSSSTSNIHSSPKEHLGNWRNSGPHQVSDWMVNYTNTSSVANESNPNSFLASELNNVPPTPTTSNHHYGKPSCNVNVLTDVQSSPLPPLYHNALQDIFKSPNAHGSEMASLIQHGIWGGNSTNEPLLHGDDQFRFGNANLWTNRGVGNTTTTTTPLGFIDKKISNELQNTGHVLSDCNPQGLSLSLSSNSQSKPSHFEEGTATATATDDPQYSKSLNVKSIMKPSIVSRDCGKSLHQDPLGTPSGYRNVGPLGPFTGYATILKSSRFLKPCKQLLDECCRQCGKKFGKSCDVPEWVSREVSVISTSAAESGVAAKGGSNSGGSSSMLYVSKENSGDGGAGSSSDFCLSSRPECQKNKAKLLYMQEEVSRRYKQYHQQMQMVVSSFESVAGLSSATPYVSLALKSVSRHFRCLKNAILDQLKLTCEVLGEDFSVIPATSPSSNKIDNNIARLRCMDQSYQKNKSGGGNIDFLESQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMTEAHKNEGASASEGSSSHQPRVDQPVSKFVGTHSITEKQFQCLEMGSSSAGTNEEKGTNDEQWNQEKRSKLECEITPSMDGTMMGFMPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQLQHEEDFRRQFGGHMIHDFVG. 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04134 806 MobiDBLite consensus disorder prediction 299 325 - -
Seca4g04134 806 Pfam Associated with HOX 376 531 IPR006563 -
Seca4g04134 806 MobiDBLite consensus disorder prediction 75 137 - -
Seca4g04134 806 MobiDBLite consensus disorder prediction 86 102 - -
Seca4g04134 806 MobiDBLite consensus disorder prediction 427 450 - -
Seca4g04134 806 MobiDBLite consensus disorder prediction 112 137 - -
Seca4g04134 806 CDD homeodomain 593 654 IPR001356 GO:0003677
Seca4g04134 806 MobiDBLite consensus disorder prediction 674 690 - -
Seca4g04134 806 Gene3D - 596 658 - -
Seca4g04134 806 SMART prehox3 371 533 IPR006563 -
Seca4g04134 806 SMART HOX_1 593 657 IPR001356 GO:0003677
Seca4g04134 806 FunFam BEL1-like homeodomain protein 9 596 658 - -
Seca4g04134 806 ProSiteProfiles 'Homeobox' domain profile. 590 653 IPR001356 GO:0003677
Seca4g04134 806 SUPERFAMILY Homeodomain-like 595 659 IPR009057 -
Seca4g04134 806 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 223 680 - -
Seca4g04134 806 MobiDBLite consensus disorder prediction 670 690 - -
Seca4g04134 806 MobiDBLite consensus disorder prediction 712 733 - -
Seca4g04134 806 Pfam Homeobox KN domain 610 649 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04134 Seca-Chr4 73873912 73882585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04134 289 662 Homeobox Transcription Factor Family AT1G19700 38.481 2.46e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g04134 POX 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04134 - - vum:124831694 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04134 4 73873912 73882585 Seca4g04134 4 73873912 73882585 ECH
Seca4g04134 4 73873912 73882585 Seca4g09229 4 218954039 218961348 PCT