Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04126 ATGATTCATCTTTGGTTTGTTGCTTTGATGTGCTTAAGTGTATGCTCTGCTCAACTGTATTATGACCCTTCTAATTGTACTTCAAATGAAATTTCCCCTGGGTCAAGGTACACTTGCAATTCAACAAAAGTTTCATGCAAAACATACTTGGTGTATAGAGCAAATGTACGTTTACAAACCATTTCAGATGTCTCAAAGCTCTTCAACATGAACTCTGATGAGGTGCTTCATCTAAACAACCTCACATCTTCTTCTCAGGTACTTAAACAAGGATTATTGAATTATCTCACATTAGCTGAGGAAAACCTTTCACAAGGTGATAAGCCTGAAGTTGATTCTGAGCTTCAAGTTCCTCTTAGATGTGCATGCCCTGAAAGCTTCTCCAGTAGTAAGAGGGTGAAGTATCTTGTTACATACCCTCTAATACTAGGAGATGATTCAGATAAATTGAGTGAGAAATTTGGCATTTCACCTGAAGATTTCCTGGAAATGAATCATTTGGACACCTTATCAACTCTTTACCCAGAGACAGTTGTTTTAATTCCAATAAGGGATGGTCCAATTAGAATATTTGACATTCCAGATTCCCCTTCTCCACCTCCAGGTTTTCTTCCCACAAATCCAGTTAAGGCACAGAAATCCACACAACCATCAAATTTGTATATTGCAGGATCTATTGTGGGATTTTTGTTGTTCATTACATTGTTGGCAAGTGGACTTTACATGAAGAGGTTGAGGAAAAGTGATGCTGTTCACTCCTTCAATCCAACAAATTCCCCTAACTTGTGGTCACCAATGAGAAGCTCTACAACTTCTTGCCTATCTCCAGATCTTCTTGTTGGGATAAAGTACTGCTTACTCAATTACCGCTTAGAAGAGCTTGAAAAGGCCACAAAAAATTTCAGTGAAGAAAACAAGATTGGTGATTTAGTCTATAAGGGCTTAATCAACAATATTGAGGTGATGATAAAGAGGATGAGGTTTGAAGACACAGGCCAGGTAATTGATTTACATTCTAAAATCAATCACATTAATATTGTGAACCTACTTGGTGTTTGTTATGGTGAGAGCAATGCTTCATGGTCTTATTTAGTATTTGAGTTTCCTAAAAATGGTTGCTTGAGGGACTGTATATCTGATCCATGCAATCCTCTAAATTGGTACAGAAGGACACAAATAGCCTTTGATATTGCAACATGTCTTTACTATTTACATTACTGTTCTTTTCCTTCCTATGCTCACATGAAAGTCAGTAGTAGAAATATATTCATAACAACAAACTGGAGAGGAAAACTTGCAGATGTTGGTGGTGCATCTGCTGCTAATGCCACACCCACAAAGAGAAATGACAGTACAGAGATTCCAAAAGGGTGGGTGGCACCAGAGTACTTCCTGAATGGTTCAGTTTCTGAAAAAGTTGACATTTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATCTCAGGAAGAGACAACTTTGATGGAAAATCAATCAAAGATTCCCTTGGATTTTTATTGGGGGAAGCCAGTGAAGGGGGTTGTTTTGAAGGGTTAAGGAGTTTCATGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTATGTTTGTCAATTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCAACTATGGATGATATTATGAAAGTCATTGCAAAAATGGTCTAG 1698 0.381 MIHLWFVALMCLSVCSAQLYYDPSNCTSNEISPGSRYTCNSTKVSCKTYLVYRANVRLQTISDVSKLFNMNSDEVLHLNNLTSSSQVLKQGLLNYLTLAEENLSQGDKPEVDSELQVPLRCACPESFSSSKRVKYLVTYPLILGDDSDKLSEKFGISPEDFLEMNHLDTLSTLYPETVVLIPIRDGPIRIFDIPDSPSPPPGFLPTNPVKAQKSTQPSNLYIAGSIVGFLLFITLLASGLYMKRLRKSDAVHSFNPTNSPNLWSPMRSSTTSCLSPDLLVGIKYCLLNYRLEELEKATKNFSEENKIGDLVYKGLINNIEVMIKRMRFEDTGQVIDLHSKINHINIVNLLGVCYGESNASWSYLVFEFPKNGCLRDCISDPCNPLNWYRRTQIAFDIATCLYYLHYCSFPSYAHMKVSSRNIFITTNWRGKLADVGGASAANATPTKRNDSTEIPKGWVAPEYFLNGSVSEKVDIFAFGVVLLELISGRDNFDGKSIKDSLGFLLGEASEGGCFEGLRSFMDPNLKDYSLPEALCLSILAKDCVADDPLHRPTMDDIMKVIAKMV. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04126 565 Gene3D Phosphorylase Kinase; domain 1 281 368 - -
Seca4g04126 565 Pfam LysM domain 148 182 IPR018392 -
Seca4g04126 565 ProSiteProfiles Protein kinase domain profile. 230 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04126 565 Pfam Protein tyrosine and serine/threonine kinase 333 558 IPR001245 GO:0004672|GO:0006468
Seca4g04126 565 SUPERFAMILY Protein kinase-like (PK-like) 283 560 IPR011009 -
Seca4g04126 565 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 90 563 - -
Seca4g04126 565 Gene3D Transferase(Phosphotransferase) domain 1 370 565 - -
Seca4g04126 565 ProSiteProfiles LysM domain profile. 137 181 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04126 Seca-Chr4 73703647 73705918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04126 37 565 Receptor kinase-like Gene Family AT2G33580 29.335 5.50e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca4g04126 PK_Tyr_Ser-Thr 4.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04126 - - lja:Lj1g3v4047410.1 869.381