Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04116 ATGGCTTCTGGTAATTCAAGATTTGTAAGTTTTCAAGATGATCCTGAACTAGAAAAACTCCCAACAACTAATGATGACAATGGAAACAAGCATAATGGAACACAAGTAATTGAGCCTAGTGCCAAAAAGGCTCAGAAGAAGGAGATAAGGAAGACAGGGAAGTTCTTGAAAGCTAGAGTGTTGTCAAGAGTGTTCTCAGAAGACTATGAGAGAGTAAGAAGAAGAATATTAGATCCCAGGGGACAAGCCATTCATAGGTGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCTCTATTCTTTTATTTACCACTAGTTCGAGATGAAGTATGCATTGATATTGGAATAGCACTTGAAGTTATCCTCATAATGATCAGATCAATGGCAGATGTATTTTACATAATTCAGATTCTCATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCGGGTATTTGGGAGAGGAGAACTTGTTATAGACCCTTCTAAGATAGCAACTAGGTACCTCAGCAAGGGTTTCTGGTTAGACTTTATTGCTGCTTTGCCCCTTCCTCAGGTGTTAATTTGGATTGTTATCCCCAATCTTGGAGGTTCAACTATGACAAACACAAAGAATGTCCTTCGCTTTATCATCATTTTCCAATACTTGCCAAGGCTATTTCTGATTTTTCCACTTTCATCCCAAATTGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACTTGATGCTTTACATGTTGGCTAGCCATTTTTTAGGAGCTAGCTGGTATCTACTATCAATTGAACGACAAGAAGCATGCTGGAGGAGTGTCTGCGAGCTGGAGAAGGCATCTTGTCAATATGGATTCTTTGCCTGCAACAGGGTTAAAGATTCTCACAGGGTTTCCTGGTTTATGACAAGTAATGTCACAAATTTATGCTCACCAAATGCTAACTTCTATCAGTTTGGTATATACGGTGATGCAGTGACATCCAGAGTTACAACCTCGGCCTTCTTTAATAAGTACTTTTTTTGTCTGTGGTGGGGTCTAAGGAATCTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTATGTTGGAGAAATAATGTTTGCCATTATTGTTGCAACTCTTGGATTGGTTCTCTTTGCATTGCTGATTGGTAATATGCAAACATACCTCCAATCAACAACTGTCCGGTTAGAAGAATGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCGTCACAGGCAGCTACCTCCAGAACTAAGACAATCTGTGCGAAAATATGATCAATATAAATGGCTTGCTACACGAGGAGTAGATGAAGAGGCTCTTCTCAAAGGACTTCCACTAGATCTTAGGAGAGACATCAAGCGCCATCTTTGTCTTGAACTAGTTAGAAGAATATATATACATACAACTTATTTGAAACCTTGCTTGCTTCTCCTATATGAACAGGTGCCATTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAGAGGCTAAAGCCTTCACTATGCACAGAGAGCACATATTTAGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATCAGAGGACATCTTGATTCTTACACTACAAATGGAGGCCGCAGTGGTTTCTTCAACTCATGCCGGATTGGGCCTGGTGATTTCTGTGGTGAGGAGCTATTGACATGGGCCTTGGATCCAAGACCAAGTGTCATACTTCCTTCTTCAACTCGAACAGTTAAGGCCATCTCAGAAGTAGAGGCTTTTGCCCTCATAGCTGAAGATCTAAAATTTGTTGCATCTCAGTTTAGAAGATTGCACAGCAAGCAACTTAGGCACAAGTTCAGGTTTTATTCACATCAATGGAGAACGTGGGCTGCATGTTTCATTCAATCTGCATGGAGACGGTATAGGAAAAGAAAGGAAGCTGCTGAACTGAGAGCCAGGGAGAATGTTCAATTTTCCTCAGTTGGTGAGACTGAAACGGCAGCGTATAGACCAGGCTTGCTTGTTGTGTATGCAACAAGGAAGGGTGTTAATGTGCATTCAGGTGGGACAAATGTTAGCTCTTTGCAGAAGCCAGCAGAACCTGATTTTTTTGTTGATGAGTAA 2142 0.4118 MASGNSRFVSFQDDPELEKLPTTNDDNGNKHNGTQVIEPSAKKAQKKEIRKTGKFLKARVLSRVFSEDYERVRRRILDPRGQAIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGIALEVILIMIRSMADVFYIIQILMKFRTAYVAPSSRVFGRGELVIDPSKIATRYLSKGFWLDFIAALPLPQVLIWIVIPNLGGSTMTNTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFLGASWYLLSIERQEACWRSVCELEKASCQYGFFACNRVKDSHRVSWFMTSNVTNLCSPNANFYQFGIYGDAVTSRVTTSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMFAIIVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMRHRQLPPELRQSVRKYDQYKWLATRGVDEEALLKGLPLDLRRDIKRHLCLELVRRIYIHTTYLKPCLLLLYEQVPLFDQMDERMLDAICERLKPSLCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRSGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQSAWRRYRKRKEAAELRARENVQFSSVGETETAAYRPGLLVVYATRKGVNVHSGGTNVSSLQKPAEPDFFVDE. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04116 713 Gene3D Helix hairpin bin 406 470 - -
Seca4g04116 713 FunFam Cyclic nucleotide-gated ion channel 1 406 470 - -
Seca4g04116 713 Pfam Ion transport protein 87 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g04116 713 ProSiteProfiles cAMP/cGMP binding motif profile. 497 594 IPR000595 -
Seca4g04116 713 Gene3D Jelly Rolls 495 615 IPR014710 -
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 259 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 348 365 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 392 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 374 385 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 442 449 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 PRINTS EAG/ELK/ERG potassium channel family signature 142 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g04116 713 SMART cnmp_10 497 628 IPR000595 -
Seca4g04116 713 FunFam Cyclic nucleotide-gated ion channel 1 495 613 - -
Seca4g04116 713 ProSiteProfiles IQ motif profile. 633 661 IPR000048 GO:0005515
Seca4g04116 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 709 - -
Seca4g04116 713 SUPERFAMILY Voltage-gated potassium channels 79 401 - -
Seca4g04116 713 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g04116 713 Gene3D - 89 403 - -
Seca4g04116 713 CDD CAP_ED 497 628 IPR000595 -
Seca4g04116 713 SUPERFAMILY cAMP-binding domain-like 409 623 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04116 Seca-Chr4 73535353 73539707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04116 53 709 Ion Channels AT2G28260 75.647 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04116 K05391 - gmx:100791992 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04116 4 73535353 73539707 Seca4g04116 4 73535353 73539707 ECH
Seca4g04116 4 73535353 73539707 Seca4g09219 4 218790695 218795549 PCT