Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04107 ATGACAATGAAGGAAGGTGAGAAGAGCCTGGATCCGCAACTATGGCATGCGTGTGCAGGTGGCATGGTTCAAATGCCTCAAGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCACGCGGAGCACGCTCACACCAACGTTGATCTGAGGGTTCCATCACTCATCCTTTGCAGGGTTGCTGCAGTGAAATTCATGGCAGACCCAGAAACCGATGAAGTCTTCGCCAAGATAAGGCTCGTTCCTCTGAGAAATGTAGAGCTTGGTTTTGATGAAGAAGGTGGTGATGTGTTGGAAAGTTCAGAAAAGCCTGCATCTTTTGCCAAGACTTTAACTCAATCCGATGCCAACAATGGTGGGGGTTTCTCTGTTCCAAGGTACTGTGCTGAAACCATCTTTCCGCGGCTCGATTACTCAGCCGAACCGCCGGTTCAGACGGTGGTGGCTAAGGATGTTCACGGCGAGCTTTGGAAGTTCAGGCATATATATAGAGGTACTTTTGTGAACCAGAAGAAACTTGTTGCAGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGGGAACTTTGTGTTGGGATTCGTAGAGCAAAGAAGGGAATTGGTGGTGGTTCTGAGGCCTCATCTGGGTGGACCTCAGCTTCAGGCTCAGGTTCAGGGAATTGTGGTATTGGATCTTATGGGGCATTCTCTTTTTTCTTGAGAGAGGAGAACAAGCCATTGAGGAATGGTTGTGTTGGTAGTTTGAGTGGGAGAACAAAGGTGAGGCCTGAAGCTGTTATGGAAGCTGTGACACTGGCTGCTAGTAACCAGCCATTTGAAGTTGTTTATTACCCAAGAGCCAGCACTCCTGAGTTTTGCATTAAGGCTTCAGCTGTGAGGGCAGCTATGAGGGTTCAATGGTGCTCTGGGATGAGATTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGAATCAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCCAATTCCCCCTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAATTGGTATCAAACATACCAACCATGCATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCACAACACCCCGACTTCCCCCTTGATGTTCAAATTTCAACACCAACATTTTCAGGCAACCATCTTGGGCTCAACAGCCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATTTCCACCTTAACAATAAACTGCAGTTGGGGTTGCTTCCAACTAATATCCAGCAGCTTGATGTGCATGGTGGGATTTCAAATGGCAACATGACCAACCATGATAAGAGCAAAGAAAGCTTATCATGCTTGCTGACCATTGGAAAATCTAATAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCACTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGATTTGTTGTCTAATAGTTCTACTGAAAAGAATTCACTAGATGAGAACAAGGACAAAGTAAAATGCTTTTTTGATGACTCCCAATCTGCACTTTCACAGCAGTTTTCACCAGGTAAGGCCTCTACTGCTGAGTTTTCTTGGCAACTTGGGTTGGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGACGGACCCTAGACCTATCAAGTCTTGGTTCTTATGATGAGATGTATAGGATACTGGCCAACATGTTTGGCATAGAAAGATCTGAATTGTTGAACCATGTGTTCTACAGTGATGCAAAAGGTGCTCTAAAGCAAACTGGAGAAGAACCCTTCAGTGAATTTATGAAGACAGCAAAAAGATTGACAATTCTGACTGATTCAGGTAGCAAAACTAGTAGAAGTATCTGGTTTTGCAGGGCCTGGATTACACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2052 0.4498 MTMKEGEKSLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNVDLRVPSLILCRVAAVKFMADPETDEVFAKIRLVPLRNVELGFDEEGGDVLESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGSEASSGWTSASGSGSGNCGIGSYGAFSFFLREENKPLRNGCVGSLSGRTKVRPEAVMEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRVQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPTMHFTPFSPPRKKLRFPQHPDFPLDVQISTPTFSGNHLGLNSPLCGLSDNAPAGIQGARHAQIGISLSDFHLNNKLQLGLLPTNIQQLDVHGGISNGNMTNHDKSKESLSCLLTIGKSNKSLEKSDDVKKHHFLLFGQPILTEQQISRDLLSNSSTEKNSLDENKDKVKCFFDDSQSALSQQFSPGKASTAEFSWQLGLDTGHCKVFLESEDVGRTLDLSSLGSYDEMYRILANMFGIERSELLNHVFYSDAKGALKQTGEEPFSEFMKTAKRLTILTDSGSKTSRSIWFCRAWITHGLDASNKTGPLSIFA. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04107 683 FunFam Auxin response factor 299 372 - -
Seca4g04107 683 Gene3D - 571 655 - -
Seca4g04107 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g04107 683 Gene3D - 104 196 IPR015300 -
Seca4g04107 683 ProSiteProfiles PB1 domain profile. 572 652 IPR000270 GO:0005515
Seca4g04107 683 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g04107 683 Gene3D - 298 372 - -
Seca4g04107 683 SUPERFAMILY DNA-binding pseudobarrel domain 99 195 IPR015300 -
Seca4g04107 683 Pfam B3 DNA binding domain 106 195 IPR003340 GO:0003677
Seca4g04107 683 CDD B3_DNA 105 194 IPR003340 GO:0003677
Seca4g04107 683 SMART B3_2 106 196 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04107 Seca-Chr4 73057468 73061058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04107 3 655 B3 DNA Binding Superfamily AT4G30080 57.081 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g04107 B3 1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04107 - - gmx:100814686 1087.4