Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04100 GAAAGTTTAGCTTCACCATTTTTCCTCTGCATTTCGCTGTTCCACCACCGTTCGTTTCTTCATTTCCCTTTATCCTTATACGTTTCAATCGATCTTAGACCATATACGAAGCCGTCGGGGGAGAAACTTAAGCTTCGCCATTTTTCCTCTGCATTTCTTTTCCTTCCACCACCGTCCATTGCTGCATTTCCCTTATCCGTTTCAATCGTTCTCTGTTTCGTTGATCTGCCATATCCAGATAATTTGGATTCTGATAAGGATCCTGAAGTTTGGAAAAGGATAAGTGAACTAACAGATGAGGATATTAGAGGGCTTGAGTTTGATACTGAAGAGGATGCATATGATTTCTACCATGAAGAGGGAGAGAGAAGTGAGAAGCATCTTAATAGGACTGATAGAATTAGGGAGGCAAAGGCCCTCACTCGAACTGAGTGTAAAGCAAGGCTCTGTGTTTCCTTAGATTATAGAAGTAGAAAGTGGAGGGTTGGAATCTTTGAGCCAGCTCATAACCATGAATTGACTCCTGCAAGTATGATACATTTGCTACCTGCTTATCGTGGGTTGAGTGTAGCAGATAAGGCACAAGTTGACGGTCTACATCATTACGGTGTCAAGACTTGTCATTTAATGGGTCTTATAATGGGTCAAAAGGGAGGTTATTCTGATTTTGGTTTTTGTAAGAAGGATTTGTACAATCATATTGATAAAGAGAATCGGGCAAAAATAGAGGATGGGGATGCATTTGCTGCGTTATGCTACCTTCAATCTAAGTTTGACAACAATCCGATGACATTTGTAAAGTTTACAACCACTGAAGATCACAAACTTGAAAACCTGTTTTGGTCAGATGTAGGAAGTATAATTGATTATATTTGTTTTGGTGATGTAGTTGCTTTTGACACAACGTACAAGAAAAACAAGTATAACAGGCCATTAGTAATTTTTTCTGGTTATAACCATCATGGTGAAACCACTATTTTCGGTTGTGCTCTTGTTGGTGATGAGAAGATTGAAACCTATAAATGGGTGCTGGAATCATTTCTTGAAGCAATGTTCAATAAAGTTCCTAAGGCTGTGGTTACTGATGGAGATGGTGCAATGCGTGAAGCTATCGGGTCTGTTTTTCCAGGTGCTCTTCACAGGTTATGTGCATGGCACCTTCACCAAAATGCTTGTGAGAATGTTAAGAATCCCAAATTCCTTGAAGATTTTAAGACCCTAATTTATGGAAATTTTAGTCGTCAGAAATTTGAGGATGAGTGGAACAAGGTTGTTGACAAACATGGTGTGAGGGAAAATAGGTGGGTCAGAAAAGTATATGACATGAAGAGGATGTGGGCCACGACATATCTGAGGGATAATTTTTTTGGGGGTATCAGGACAACTTCTATATGTGAAGGGATTAACTCATTCATTAAGAGGTATGTTCAAAGCAAAAATAGCCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTGAATGAATATAGACACAACGAGTTAACTTCAGATTTCAAGTCGAAATACACTCAACCTGTGATGACTACTGCTTTGTAA 1557 0.3905 ESLASPFFLCISLFHHRSFLHFPLSLYVSIDLRPYTKPSGEKLKLRHFSSAFLFLPPPSIAAFPLSVSIVLCFVDLPYPDNLDSDKDPEVWKRISELTDEDIRGLEFDTEEDAYDFYHEEGERSEKHLNRTDRIREAKALTRTECKARLCVSLDYRSRKWRVGIFEPAHNHELTPASMIHLLPAYRGLSVADKAQVDGLHHYGVKTCHLMGLIMGQKGGYSDFGFCKKDLYNHIDKENRAKIEDGDAFAALCYLQSKFDNNPMTFVKFTTTEDHKLENLFWSDVGSIIDYICFGDVVAFDTTYKKNKYNRPLVIFSGYNHHGETTIFGCALVGDEKIETYKWVLESFLEAMFNKVPKAVVTDGDGAMREAIGSVFPGALHRLCAWHLHQNACENVKNPKFLEDFKTLIYGNFSRQKFEDEWNKVVDKHGVRENRWVRKVYDMKRMWATTYLRDNFFGGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELTSDFKSKYTQPVMTTAL. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04100 518 Pfam FAR1 DNA-binding domain 120 174 IPR004330 -
Seca4g04100 518 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 99 515 IPR031052 GO:0006355
Seca4g04100 518 Pfam MULE transposase domain 296 390 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04100 Seca-Chr4 72878988 72880994 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g04100 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04100 - - ccaj:109792835 546.969