Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04095 ATGCCGCCCAAGTTCGACCCTTCACAGGTCGTAGACGTTTACGTCAGAGTCACCGGCGGCGAAGTCGGTGCGGCCAGTTCGCTCGCCCCGAAGATCGGTCCGCTTGGTCTCTCTCCCAAAAAGATCGGTGAAGACATCGCGAAGGAAACCGCTAAGGACTGGAAGGGGCTGAGGGTCACCGTCAAGCTCACTGTCCAGAACCGTCAGGCTAAGGTCTCCGTGGTCCCCTCCGCTGCAGCGCTCGTCATCAAAGCCCTCAAGGAGCCTGAGCGCGACCGCAAGAAGACCAAGAATATCAAGCACAACGGCAACATATCCCTCGATGATGTCATCGAGATTGCCAGGGTCATGAAGCCAAGGTCCATGGCCAAGGACCTTTCCGGCACCGTCAAGGAGATCCTTGGCACCTGCGTTTCCGTTGGGTGCACCGTTGACGGCAAGGACCCCAAGGACTTGCAGCAGGAAATCACCGACGGAGATGTTGAAGTCCCTCTTGATTGA 501 0.5768 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMKPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04095 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Seca4g04095 166 FunFam 60S ribosomal protein L12 1 81 - -
Seca4g04095 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Seca4g04095 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Seca4g04095 166 FunFam 60S ribosomal protein L12 82 164 - -
Seca4g04095 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Seca4g04095 166 Gene3D - 82 164 IPR036769 -
Seca4g04095 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Seca4g04095 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Seca4g04095 166 Gene3D - 1 81 IPR036796 -
Seca4g04095 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Seca4g04095 166 MobiDBLite consensus disorder prediction 147 166 - -
Seca4g04095 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Seca4g04095 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04095 Seca-Chr4 72810568 72811068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04095 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.634 4.97e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04095 K02870 - twl:119990680 326.25