Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04094 ATGGCTAAAGATATTGAGGTTCAAGAGCAAGGAGAATACTCAGCTAAAGACTACCAAGACCCACCTCCTGCACCCTTGTTCGATCCAGAGGAGCTCACCCAATGGTCCTTCTACAGAGCCCTCATCGCTGAGTTCATAGCCACTCTTCTCTTCCTTTATGTCACCGTCTTAACCATCATTGGCTACAAACACCAAACTGATAAGACCATTGGTGGCACTGATTGTGATGGTGTTGGCATTTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGTATTTCTGGAGGACACATAAACCCTGCTGTGACATTTGGGTTGTTCTTGGGACGCAAGGTGTCTTTGATAAGGGCGTTTTTGTACATGGTAGCACAGTGTGCTGGTGCTATCTGTGGAACTGGACTAGCCAAGGGCTTCCAAAAAGCATACTACAACAGGTATGGAGGTGGTGCTAACTCTGTGGCAGATGGTTACAGCAAAGGAACCGCTTTGGGTGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTGTTGGCACCACTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTTACTGGTACTGGCATTAACCCAGCAAGAAGTTTCGGAGCAGCTGTCATTTACAACAAAGACAAAATCTGGGATGATCAGGTAAACATATATCCATATCCATAA 768 0.4622 MAKDIEVQEQGEYSAKDYQDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKHQTDKTIGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAFLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYSKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKDKIWDDQVNIYPYP. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04094 255 CDD MIP 39 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 Pfam Major intrinsic protein 31 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 NCBIfam MIP family channel protein 43 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 249 IPR034294 -
Seca4g04094 255 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Seca4g04094 255 SUPERFAMILY Aquaporin-like 30 243 IPR023271 -
Seca4g04094 255 Gene3D Glycerol uptake facilitator protein. 24 253 IPR023271 -
Seca4g04094 255 FunFam Probable aquaporin PIP1-2 24 254 - -
Seca4g04094 255 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g04094 255 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g04094 255 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04094 Seca-Chr4 72792011 72793793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04094 1 248 Major Intrinsic Protein MIP AT5G60660 80.645 3.09e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04094 K09872 - gmx:100811119 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04094 4 72792011 72793793 Seca4g04094 4 72792011 72793793 ECH
Seca2g04626 2 132285344 132287489 Seca4g04094 4 72792011 72793793 ECH
Seca2g04701 2 133163096 133164731 Seca4g04094 4 72792011 72793793 ECH
Seca4g04094 4 72792011 72793793 Seca4g09207 4 218298565 218300196 PCT