Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04082 ATGAGTTCTGAGGAAAAGCCTCCTGTGAGTGAGGAACATGATGATGCAGCAGCTTCTTGCAGACGAACAGTTTCTCTTCCTGTGCTCAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTGATTCTAGAAATACCCTCAAGAAAACCAGAAGAGTGTTCCCAAGATTTTGTTGCAATCAAAATGCCACCCACACCTAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATACATAATTCTCCTGGGCCTTCATCATCCAAAGGCAAATCATCCAGAAGAAGCCTCCTACCAAAATTGAGCTTCAGGTATCGGACACCACCAGATATTGAAAAGCCAACTCAAGAAGTTTCCTCCTCAGGCATTCGAGAAAAGCCTTCCATCTCAAGATCATTGTCCCTTTCTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCGGTGGAAGAAATTGGACATTCAAATCCAGAATCTACTCATGGTGGAAGTGTTGGTGGTCCTCTACATAAGAGAGATACTCAACGAAAGATAGCTCGCTCTCTTTCAGTGCCTGCCAACAACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGTGTAAAGGAAGGAATTGAATTGTTGGCCACGTCCCCAGCAAAGGATACTGAAAATGAAGATGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACTTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGATGTTCGAAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATACTGGAGCAAGTAGATCTCAGCTGGAAGATGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAACTATTGGTTGCAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTGCTCTCCTCCATGACAGCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGCCAGTCAGACATGCCTAATTGCCAGGGATGGTGGCTTTGGTGTTAAGTTTAAGTATCTGCAGCCCAAGATTTTTGTTTTCTGGATGGCTGTAGCTGTAGCTAAAGCATTTTTCTCTACTAGTGTAGCATTATTGGTTGGTTATGGATGCATGACAGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCTGGCTTTAGCAGAGCAGCAACATGGCCCTCAACTGATGACACAAGCAGGACAATACCCTCAAACTGTAAACACACCACGTTCTTCAGTCCCTCCTAACCACAGCCAACCCATGGTTCAAAATCAACAGAACTCAAATCAGAACTGA 1671 0.4393 MSSEEKPPVSEEHDDAAASCRRTVSLPVLKVDDPMGITEETTHVPPRKRQNLILEIPSRKPEECSQDFVAIKMPPTPSPTPTPKRVNFLVTSRSVDAPIHNSPGPSSSKGKSSRRSLLPKLSFRYRTPPDIEKPTQEVSSSGIREKPSISRSLSLSKIFTPRIKRTSSLPVEEIGHSNPESTHGGSVGGPLHKRDTQRKIARSLSVPANNKDKSIRRMDSFFRVVPSTPRVKEGIELLATSPAKDTENEDADGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVRNLPVTLLRIQSVRNRNTGASRSQLEDEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLPFSCVLGLLSSMTASTMVKSRFIWIYASVQFALVVLFAHIFYSLASQTCLIARDGGFGVKFKYLQPKIFVFWMAVAVAKAFFSTSVALLVGYGCMTVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWLALAEQQHGPQLMTQAGQYPQTVNTPRSSVPPNHSQPMVQNQQNSNQN. 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04082 556 CDD RING_CH-C4HC3_MARCH 263 311 - -
Seca4g04082 556 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Seca4g04082 556 MobiDBLite consensus disorder prediction 529 556 - -
Seca4g04082 556 MobiDBLite consensus disorder prediction 171 195 - -
Seca4g04082 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Seca4g04082 556 MobiDBLite consensus disorder prediction 91 147 - -
Seca4g04082 556 MobiDBLite consensus disorder prediction 91 115 - -
Seca4g04082 556 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Seca4g04082 556 SMART ringv_2 262 311 IPR011016 GO:0008270
Seca4g04082 556 MobiDBLite consensus disorder prediction 133 147 - -
Seca4g04082 556 SUPERFAMILY RING/U-box 259 313 - -
Seca4g04082 556 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g04082 556 MobiDBLite consensus disorder prediction 1 51 - -
Seca4g04082 556 PANTHER OS02G0165000 PROTEIN 23 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04082 Seca-Chr4 72696931 72702089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04082 260 317 C3H Transcription Factor Family AT2G37950 49.153 7.42e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04082 - - gmx:100788108 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04082 4 72696931 72702089 Seca4g04082 4 72696931 72702089 ECH
Seca4g04082 4 72696931 72702089 Seca4g09201 4 218189192 218194875 PCT