Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g04082 | ATGAGTTCTGAGGAAAAGCCTCCTGTGAGTGAGGAACATGATGATGCAGCAGCTTCTTGCAGACGAACAGTTTCTCTTCCTGTGCTCAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTGATTCTAGAAATACCCTCAAGAAAACCAGAAGAGTGTTCCCAAGATTTTGTTGCAATCAAAATGCCACCCACACCTAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATACATAATTCTCCTGGGCCTTCATCATCCAAAGGCAAATCATCCAGAAGAAGCCTCCTACCAAAATTGAGCTTCAGGTATCGGACACCACCAGATATTGAAAAGCCAACTCAAGAAGTTTCCTCCTCAGGCATTCGAGAAAAGCCTTCCATCTCAAGATCATTGTCCCTTTCTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCGGTGGAAGAAATTGGACATTCAAATCCAGAATCTACTCATGGTGGAAGTGTTGGTGGTCCTCTACATAAGAGAGATACTCAACGAAAGATAGCTCGCTCTCTTTCAGTGCCTGCCAACAACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGTGTAAAGGAAGGAATTGAATTGTTGGCCACGTCCCCAGCAAAGGATACTGAAAATGAAGATGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACTTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGATGTTCGAAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATACTGGAGCAAGTAGATCTCAGCTGGAAGATGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAACTATTGGTTGCAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTGCTCTCCTCCATGACAGCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGCCAGTCAGACATGCCTAATTGCCAGGGATGGTGGCTTTGGTGTTAAGTTTAAGTATCTGCAGCCCAAGATTTTTGTTTTCTGGATGGCTGTAGCTGTAGCTAAAGCATTTTTCTCTACTAGTGTAGCATTATTGGTTGGTTATGGATGCATGACAGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCTGGCTTTAGCAGAGCAGCAACATGGCCCTCAACTGATGACACAAGCAGGACAATACCCTCAAACTGTAAACACACCACGTTCTTCAGTCCCTCCTAACCACAGCCAACCCATGGTTCAAAATCAACAGAACTCAAATCAGAACTGA | 1671 | 0.4393 | MSSEEKPPVSEEHDDAAASCRRTVSLPVLKVDDPMGITEETTHVPPRKRQNLILEIPSRKPEECSQDFVAIKMPPTPSPTPTPKRVNFLVTSRSVDAPIHNSPGPSSSKGKSSRRSLLPKLSFRYRTPPDIEKPTQEVSSSGIREKPSISRSLSLSKIFTPRIKRTSSLPVEEIGHSNPESTHGGSVGGPLHKRDTQRKIARSLSVPANNKDKSIRRMDSFFRVVPSTPRVKEGIELLATSPAKDTENEDADGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVRNLPVTLLRIQSVRNRNTGASRSQLEDEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLPFSCVLGLLSSMTASTMVKSRFIWIYASVQFALVVLFAHIFYSLASQTCLIARDGGFGVKFKYLQPKIFVFWMAVAVAKAFFSTSVALLVGYGCMTVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWLALAEQQHGPQLMTQAGQYPQTVNTPRSSVPPNHSQPMVQNQQNSNQN. | 557 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g04082 | 556 | CDD | RING_CH-C4HC3_MARCH | 263 | 311 | - | - | |
Seca4g04082 | 556 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 255 | 317 | IPR011016 | GO:0008270 | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 529 | 556 | - | - | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 171 | 195 | - | - | |
Seca4g04082 | 556 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 318 | IPR013083 | - | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 91 | 147 | - | - | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 91 | 115 | - | - | |
Seca4g04082 | 556 | Pfam | RING-variant domain | 263 | 310 | IPR011016 | GO:0008270 | |
Seca4g04082 | 556 | SMART | ringv_2 | 262 | 311 | IPR011016 | GO:0008270 | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 133 | 147 | - | - | |
Seca4g04082 | 556 | SUPERFAMILY | RING/U-box | 259 | 313 | - | - | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Seca4g04082 | 556 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Seca4g04082 | 556 | PANTHER | OS02G0165000 PROTEIN | 23 | 423 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g04082 | Seca-Chr4 | 72696931 | 72702089 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g04082 | 260 | 317 | C3H Transcription Factor Family | AT2G37950 | 49.153 | 7.42e-13 | 66.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g04082 | - | - | gmx:100788108 | 751.125 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca4g04082 | 4 | 72696931 | 72702089 | Seca4g04082 | 4 | 72696931 | 72702089 | ECH | |
Seca4g04082 | 4 | 72696931 | 72702089 | Seca4g09201 | 4 | 218189192 | 218194875 | PCT |