Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04081 ATGGCCGAGCCTCTCCTCAACACTGAACTCTCTTCCTCTAAAACCCTAGACCCAATCGACACTCACGATTCCACTTGCGAACTGCATCAAACGCCTCCGCAAGACGCTCAAATCCATGAAATAAACGACGACGTCGTTCGGACTGAGAAACGGAAGAGGGACGATGACGATGGCGACCGTTCGCTCCATCCATTGTGGAAGACCAGCCTCTGTTCCTTCTTCAGGCGCCAAGACGGCTCATGTAGCCATGGCGACGCGTGCCGCTACGCGCACGGCGAGGCAGAGCTCCGTCCTCGACCCGACAACACGTGGGACCCGACCTCCGAGCGAGCGAAGAAGGCGTTGAAAACCGAGACGGAAGAGGAACGCGGCGTTTCAGAGGGTGTGATGATGACGGAGGCCGTTGTCGACGATGACGATGACGGCGGTGATGACGGTTGCGCCGCCTCCAATCACGCGCTCAGTAAATGCTTGGTGCATTTGCCGAGGAAATGGAGCTCCGAGAACTTGAGGAATTTCCTCAACGAGGAGGGTATACCTTTTAAGCATGCGAAGAAAAAGAAAGGTATGATGGTTGGTTTCGTTACTTTTGAAGATGAAGAACAAATGAAGAGTTCATCAAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAGGTTAAAGGTTGCTGATGTCATTCCTCAATCATTGGAGAAGAAATGTAATTCCGAAGTTAGTGCATTAGATAAGGAGAATTCAGGGGGCGATGTTCCTTCAAATGATGATAATGTGGCAGTTGATGGTTCCGTGTCAAAGACAAGAAGCTTGCGTGATGTAGTGACTCCTCTAGCACATATGGCCTATGCTGATCAGTTGGAACAGAAAAAAAGCTCTCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCATGTCCAACTGGTGTTCCTCTTCCCGAGTGGATTCTGAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATTATTGCATCACCAATTGTTAATGGATATCGTAATAAGTGTGAATTTTCAGTTGGATATTCTCTGGAAGGCAAAGTAACAGTGGGATTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCCGTGGACTGCCCAAATGTTTCTCCGATTGCTTGCAAATATGCTACTATCTTTCAGGAATTTCTACAGCATTCTGATTTACCAGTTTGGAACAGATTCAAAAATACTGGATTTTGGCGTCAATTAGCTAATTGGTTTTCATATTTCTCTTGTAAGGTTCGAGAAGGGAGGACAAATGGGAATGTTATTGATGCTGATGCTTTTGGTGGTATTGCAGAGGCCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTGGCGGCTGAATTTAAGAGGCTTGCTCAGGCATTTATTGCCGGAGCTTCTTCGCATTGTCCAACATTGCCCCTTTCAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTAGCGCCAGCTGATGCACCACTTCATTACCTTCCCATTCCTAAAGCAGTTGGTGATCCTGAGATGGATGAAAACAATAATGCCATGGATGTAAGAATTCATGATTATATCAGCAATCTCCGGTTCTCTATTTCTCCAACTGCGTTTTTTCAGGTTAACACTCTTGCTGCCGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGTCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAACTGTAGATTTATATGTTCAAAGGCAGAGGATGTAATGGGATCTCTGTTAAGGGAATACCTAAATGTGCCAAAGGAACAAGTTGATGATCCTAATATCTCTGAAAGTGGCAATAACATTCCTGAGGATAGTGCCTGCCCAAAGCCTGAAAATGGTGAAATGACATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAGGTGATGCTCAGAAGGGTAGCTCTTCTGAAAATGGGAATACTTCCAAGCAACAGTTTAAAAATGTTGTTGCTATTGTTGATCCTCCTCGTGCTGGGCTTCATCCAACTGTGATCAAAGCTTTAAGAACTCATCCACGTCTACGGAGACTTGTATATATATCATGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACTCCATCCCCAATAACAATGGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCAACCCATAAAAGCTATGGCTGTTGATCTTTTTCCACACACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2469 0.4471 MAEPLLNTELSSSKTLDPIDTHDSTCELHQTPPQDAQIHEINDDVVRTEKRKRDDDDGDRSLHPLWKTSLCSFFRRQDGSCSHGDACRYAHGEAELRPRPDNTWDPTSERAKKALKTETEEERGVSEGVMMTEAVVDDDDDGGDDGCAASNHALSKCLVHLPRKWSSENLRNFLNEEGIPFKHAKKKKGMMVGFVTFEDEEQMKSSSKDLEGKSIGNKRLKVADVIPQSLEKKCNSEVSALDKENSGGDVPSNDDNVAVDGSVSKTRSLRDVVTPLAHMAYADQLEQKKSSLMQILKKLTRNARKACPTGVPLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSPIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLANWFSYFSCKVREGRTNGNVIDADAFGGIAEAMLIVQVSTASFDDAQVAAEFKRLAQAFIAGASSHCPTLPLSALVVQDHQGISNVAPADAPLHYLPIPKAVGDPEMDENNNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICSKAEDVMGSLLREYLNVPKEQVDDPNISESGNNIPEDSACPKPENGEMTSHCPENNNAEVGGDAQKGSSSENGNTSKQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPETLVANAIELCTPSPITMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLER. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04081 822 Pfam tRNA (Uracil-5-)-methyltransferase 709 758 IPR010280 GO:0006396|GO:0008173
Seca4g04081 822 Coils Coil 282 302 - -
Seca4g04081 822 ProSitePatterns RNA methyltransferase trmA family signature 1. 717 749 IPR030390 -
Seca4g04081 822 Gene3D Vaccinia Virus protein VP39 521 821 IPR029063 -
Seca4g04081 822 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Seca4g04081 822 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 83 822 IPR045850 -
Seca4g04081 822 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 535 822 IPR029063 -
Seca4g04081 822 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Seca4g04081 822 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g04081 822 MobiDBLite consensus disorder prediction 96 125 - -
Seca4g04081 822 Pfam Methyltransferase domain 579 637 IPR025714 -
Seca4g04081 822 MobiDBLite consensus disorder prediction 678 706 - -
Seca4g04081 822 Gene3D - 157 234 IPR012677 -
Seca4g04081 822 Gene3D - 343 418 - -
Seca4g04081 822 Gene3D - 60 99 - -
Seca4g04081 822 Gene3D Vaccinia Virus protein VP39 276 342 IPR029063 -
Seca4g04081 822 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 274 419 IPR029063 -
Seca4g04081 822 MobiDBLite consensus disorder prediction 650 706 - -
Seca4g04081 822 CDD AdoMet_MTases 581 635 - -
Seca4g04081 822 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Seca4g04081 822 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 272 822 IPR010280 GO:0006396|GO:0008173
Seca4g04081 822 SUPERFAMILY RNA-binding domain, RBD 160 226 IPR035979 GO:0003676
Seca4g04081 822 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04081 Seca-Chr4 72677472 72683281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g04081 tRNA_U5-meth_tr 2.2e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04081 K15332 - gmx:100777601 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04081 4 72677472 72683281 Seca4g04081 4 72677472 72683281 ECH