Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04079 ATGTTCAGTAAGACCCTTTCTTTTGCCAAAGCCATGGGATGCTGTAATTGCTTTGGGTTCATTGGTAGACGGAACCGTCAAAGCGCTATGCCTGACATCAACCATAATCTCTCCCAGGAGTTGTTGTTGGATGATAACATTGAAGATGAAGAGCACTTGTATAATGATGAAGTTACTAACACCACTAGTGGAGATGAGAATGAGAATGAGGGGCAAACTCGTCCCAAGCGATCGGAGGAAATTTTGAACTTGAGAGTAGAGAAAGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTAATAAAGTTGTTCGCACAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCCGGTAGTTATGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGGAAAGCATTATGCAATTAAGGCCTTTCATAAGTCCCATTTATTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGAGTGATGTTCTACGAGAGGTATATTGCTTCTGTATACTTTCTTTTCAGGTTTTCATTATGAAAATGCTGGAACATCCTAATATTGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATATGTGGAAGGCAAGTGGGTTTGTGAGGGCTCAGGTCCCACTTGTGGTTTAGGTGAAGAGACTGCCAGGAGATACTTGCGTGATATTGTTTGTGGATTAACGTATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCTGATAATCTGTTGATTACTCGTCACGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATAATAATGATGTGCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCGGAATGTATTTTAGGTGTTACCTATCATGGCAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAAAATAGTGAATAATCCTTTAGTGCTCCCAAATGATATGAACCCGCGGTTGAAGAACTTAATAGAAGGCCTACTTTTCAAAGACCCGAGATTAAGGATGACATTGGGTGATGTTGCGGGGGATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGATTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGAGAGTGAAGACAATAATGAGAAGAGCAATATGCTTTCTTGA 1266 0.4139 MFSKTLSFAKAMGCCNCFGFIGRRNRQSAMPDINHNLSQELLLDDNIEDEEHLYNDEVTNTTSGDENENEGQTRPKRSEEILNLRVEKGMICRQFPVKETNKVVRTEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMSDVLREVYCFCILSFQVFIMKMLEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVCGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDNNDVLRRSPGTPVFTAPECILGVTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPRLKNLIEGLLFKDPRLRMTLGDVAGDSWVIGDDGPIPDYLCWCKRKSLESEDNNEKSNMLS. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04079 421 Pfam Protein kinase domain 120 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04079 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Seca4g04079 421 ProSiteProfiles Protein kinase domain profile. 118 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04079 421 SUPERFAMILY Protein kinase-like (PK-like) 114 396 IPR011009 -
Seca4g04079 421 MobiDBLite consensus disorder prediction 57 78 - -
Seca4g04079 421 FunFam Serine/threonine-protein kinase Ssp1 112 224 - -
Seca4g04079 421 Gene3D Phosphorylase Kinase; domain 1 112 223 - -
Seca4g04079 421 CDD STKc_LKB1_CaMKK 124 389 - -
Seca4g04079 421 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 68 392 - -
Seca4g04079 421 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Seca4g04079 421 SMART serkin_6 118 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04079 421 FunFam Serine/threonine-protein kinase GRIK2 108 421 - -
Seca4g04079 421 Gene3D Transferase(Phosphotransferase) domain 1 227 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04079 Seca-Chr4 72638130 72643773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04079 124 388 CBL-interacting serine-threonine protein kinases AT5G35410 32.830 5.95e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Seca4g04079 Pkinase 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04079 K00908 - gmx:100789178 688.337