Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04074 ATGGCTTCCTCCAACAATTCCAATTCAGAAAACAAGAAAATAAAAAATGGCGAAACCTCCAAAGCCGCAACTAAAGCCAAAAAGGTCAGAGAAGAGAAAAAGAAGGTGAAGGTGAAGAAGGAGAAGGAGGAGAACAAAAAGAAGAAGAATAAGAAGCTCAAGCTCAACAATGGCAATTCCAAACAACATGAAAAAGAAGAAGCTAATGGAAAGCCACAGGAGTACGACAAGGAAGAGGTAGGCGAAGTCGAAGGTGGAGAAGCGGCTAAAACGCACGTGTTTCCGATGAATCGTATCAGGACAGTGCTAAAGGGCGAAGATCCTAATTTACGTGTTTCTCAGGAAGCTTTATTGGCCATCAACAAAGCTACGGAGAAGTTCCTTGAACAATTCACGCAGGACGCTTATGCTTGTTCTGTTCAGGACCGTAAGAAATCTCTGAGTTACAAGCACCTATCAAATGTTGTTTGTAAGCAGAGAAGATATGACTTTCTTTCTGATTATGTTCCTGAGAAAGTGAAAGCCGAGGATGCATTAAGAGAGAGAAATTCAAAAAGCAATGGAGGAGGTTTGAAAATGTAA 582 0.4107 MASSNNSNSENKKIKNGETSKAATKAKKVREEKKKVKVKKEKEENKKKKNKKLKLNNGNSKQHEKEEANGKPQEYDKEEVGEVEGGEAAKTHVFPMNRIRTVLKGEDPNLRVSQEALLAINKATEKFLEQFTQDAYACSVQDRKKSLSYKHLSNVVCKQRRYDFLSDYVPEKVKAEDALRERNSKSNGGGLKM. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04074 193 Coils Coil 26 58 - -
Seca4g04074 193 SUPERFAMILY Histone-fold 88 170 IPR009072 GO:0046982
Seca4g04074 193 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 49 187 - -
Seca4g04074 193 MobiDBLite consensus disorder prediction 1 91 - -
Seca4g04074 193 Gene3D Histone, subunit A 54 171 IPR009072 GO:0046982
Seca4g04074 193 MobiDBLite consensus disorder prediction 30 56 - -
Seca4g04074 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 156 IPR003958 -
Seca4g04074 193 MobiDBLite consensus disorder prediction 57 86 - -
Seca4g04074 193 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04074 Seca-Chr4 72540133 72544382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04074 85 152 CCAAT-HAP5 Transcription Factor Family AT1G07980 47.059 1.61e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g04074 CBFD_NFYB_HMF 1e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04074 - - lja:Lj3g3v3086110.3 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04074 4 72540133 72544382 Seca4g04074 4 72540133 72544382 ECH