Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04055 ATGAGAGTTCCCTTGGTTCATCATGTTCAAGACCCAAACCCTAATCCTAACCCTAATCCAAATCCACCTAAGAAAAAGAGAAATCTACCAGGAACACCAGATCCAGATGCACAAGTGATAGCTCTGTCACCCAAGTCCCTGATGGCTACCAACCGTTTTGTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAACTGCACCGACGGGGACACAACCTTCCATGGAAGCTGAAGCAAAGAACAAACAAAGATCAAGTGAGGAAGAAAGTGTATGTGTGTCCAGAGAAGAGCTGTGTGCACCATGACCCTTGTAGAGCACTGGGAGACTTGACAGGGATAAAGAAACACTACAGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGTTTCATAACACACAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGATAACTACAGTTCCAGCAGCTTTAAGTAACTTCAGAAACGATCATTTGATGACAAATGCTCAAACCTCAAGGATCCCTCATATTTTTCCTGGGTTTCATATTCATTCAGAATTGGGTTCTTCAGGATCAGAACCATTGGGGAATTACTCTGAAACAGACCATGGACAAAAGCTTAGACAGCTCCCACTATGGCTAGACCAGGCTAATTCTCATCAACAGCTTCATCTTCCCCTTAACTTTCAAACCAAAACAAGTGGTTTCTCATCAGGAGCAAACTCTGCTTGCACCATGCCTGATCTAGTCCAAACAATGGACATGTTTGGATCACAACCACAGTGGATGAATTACCGGTACCAAGAAGCAGTGCCATTCACAAGTAGTGGAATTAATAACATTTCCGTGCCTCCAAATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGAGTTGTCCTTGTCAGATAGTGTGATAAGCTCTTTGTACTTGAGTAATCAGAACCAACAGGGAGGAGAAGGAGGAAGAGGAGGGCCAACCACTCACATGTCAGCCACTGCACTGTTGCAGAAAGCAGCTCAAATGGGATCTACAACAATCAACAACAACAACACATTTGGCTTGATGGGCTCAAACAGGAATAATATTGTTGAGGTTCAGAAATTTTATAAGCAAGGTGAAAACTTGAATGAGTTGGTGAATTTGGAAGCTAACAACAACATTGGAGGTGGGTATTTATTAAACGAGTCAAATGTTGTGAATGGGTCGAAGAGTTTGGATCACATGGTAATTATGCCGGTGGATAAAGAGACAACAGCAAAATCAATTATGGGGAATTCAATAAGTAACAGAAAGGAGCTGGGTTTAACCAGAGACTTTCTTGGTGTTGGAAATGACTCAATAAACAGGACTTTCTTGCAGCAAGAGCTAGGTGAATTCAACGTGCAGAGCCAGTACAGTGGACACTACTGCTAG 1530 0.4288 MRVPLVHHVQDPNPNPNPNPNPPKKKRNLPGTPDPDAQVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSNFRNDHLMTNAQTSRIPHIFPGFHIHSELGSSGSEPLGNYSETDHGQKLRQLPLWLDQANSHQQLHLPLNFQTKTSGFSSGANSACTMPDLVQTMDMFGSQPQWMNYRYQEAVPFTSSGINNISVPPNGLKQEQEENKGELSLSDSVISSLYLSNQNQQGGEGGRGGPTTHMSATALLQKAAQMGSTTINNNNTFGLMGSNRNNIVEVQKFYKQGENLNELVNLEANNNIGGGYLLNESNVVNGSKSLDHMVIMPVDKETTAKSIMGNSISNRKELGLTRDFLGVGNDSINRTFLQQELGEFNVQSQYSGHYC. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04055 509 Gene3D Classic Zinc Finger 32 105 - -
Seca4g04055 509 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g04055 509 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Seca4g04055 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 489 IPR031140 -
Seca4g04055 509 FunFam protein indeterminate-domain 12-like 32 101 - -
Seca4g04055 509 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Seca4g04055 509 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Seca4g04055 509 Gene3D Classic Zinc Finger 109 187 - -
Seca4g04055 509 MobiDBLite consensus disorder prediction 11 28 - -
Seca4g04055 509 SMART c2h2final6 130 150 IPR013087 -
Seca4g04055 509 SMART c2h2final6 53 75 IPR013087 -
Seca4g04055 509 SMART c2h2final6 95 125 IPR013087 -
Seca4g04055 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Seca4g04055 509 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04055 Seca-Chr4 72217973 72220359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04055 24 498 IDZ Gene Family AT5G03150 44.332 4.07e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04055 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04055 K25870 - gmx:100781896 600.512