Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04047 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGCTGAGAAGAATGCACTCTGTGACAAAGAATGTGAGAAAGGTGCTTGTGTTTGTTGTTTATCCTCTCCAACCTGTTCATCTTCTAGTTCCTCTTCACCTTGTGTGTCTTCTTCTTATCTTGAGCTTTGGCACGCTTGTGCTGGCCCTCTCACCTCTTTGCCTAAGAAAGGAAATGTAGTGGTCTATTTTCCACAAGGTCACTTAGAACAAGTTTCCTCTTTCTCTCCTTTCTCACCAATGGAGATGCCCACCTATGATCTTCAGCCACAGATCTTTTGTAAGGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTGTATACACAGGTTACTTTGCTACCTCAGGCTGAGTTGGGAGGGATGCATTTGGAAAGCAAAGAAGTTGAGAAATTGGGAGGAGATGAGGAAGGAGATGGAGGATCAGCTACAAAATCAACCCCTCACATGTTCTGCAAAACACTGACTGCCTCTGATACCAGCACTCACGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAACAGAGACCCTCTCAAGAACTCATTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTGTTTTTGTAAGCCAAAAGAGTCTGGTTTCTGGTGATGCAGTGCTCTTTCTCAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCCGAAACAATTGTTGGTAACCGGAACTGTTATCCCAATATTCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTATTCCCTACCAAAAGTATGTTAAAAGCATTAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAACGAGTGATTTGGATCCATATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATGTTGAGCCTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCTCCCTTGAGTATTCAGTCTTCCCCAAGACTGAAGAAACTGAGGACAGGTCTGCAGGTTTCCTCACCAAGTCACCTCATCACTGCAGGAGGCAGTGGAATGATGGGCTTTGAGGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGAGACAGTAACCAACCGGCCAGGTTTTGAGATGAGCTCTCCAAGTCATCCAAATCTTGCATCAACTGGAGTAGGAAAGGTCACCTCTGCTGAGCTTATGAGTGTTCACCCTTTCAGTTATGCAGGCTTTATGGAAACTAATAGGTTTCCAGGGGTCTTGCAAGGTCAAGAAATATGTCCTTTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAAAACCCAATGTTGCTTTCAACCTCCATCAGGCAACCAAACCCAACTTTCAATCTGCATATTTTCCTTATGGGGATATTCACAAAGCTGGTCAAGCTAGCATCTTTTGCTCAAAACCCACAAGTTTCCAAAGAGAGAATGTCTCATTTAACACACCAACCACTCAGGCAGGGATCATTAGAAATGAAGTTGGACTATCAGATCTCCCAAATGAGCACAAGCTGCAGGACAATATTTCTGCTGCTGCTTCATTAGGGGCTTCTAATATGAGGATTCCAAATGATAACAATGTCAAAGGAAAGGTAAATGCCTGCAAACTATTTGGGTTTCCTTTGTCTGGGGAAACTAGTACCCAAAATTTACAGAACCCTGCTAAAAGGAGTTGCACAAAGGTGAGGGATGATAACAACAAAATGATATTATGA 2034 0.4341 MEIDLNHEVTEAEKNALCDKECEKGACVCCLSSPTCSSSSSSSPCVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVSSFSPFSPMEMPTYDLQPQIFCKVVNVQLLANKENDEVYTQVTLLPQAELGGMHLESKEVEKLGGDEEGDGGSATKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSVFVSQKSLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPETIVGNRNCYPNILSSVANAISTKSMFHVFYSPRASHADFVIPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGMLIGTSDLDPYRWPKSKWRCLMVRWDEDVEPNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVSSPSHLITAGGSGMMGFEESIRSPKVLQGQENAGFVSLYYGCETVTNRPGFEMSSPSHPNLASTGVGKVTSAELMSVHPFSYAGFMETNRFPGVLQGQEICPLKSLTGKVDLNLGAWGKPNVAFNLHQATKPNFQSAYFPYGDIHKAGQASIFCSKPTSFQRENVSFNTPTTQAGIIRNEVGLSDLPNEHKLQDNISAAASLGASNMRIPNDNNVKGKVNACKLFGFPLSGETSTQNLQNPAKRSCTKVRDDNNKMIL. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04047 677 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g04047 677 Gene3D - 328 398 - -
Seca4g04047 677 Gene3D - 162 266 IPR015300 -
Seca4g04047 677 FunFam Auxin response factor 162 266 - -
Seca4g04047 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g04047 677 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Seca4g04047 677 CDD B3_DNA 162 264 IPR003340 GO:0003677
Seca4g04047 677 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Seca4g04047 677 SMART B3_2 164 266 IPR003340 GO:0003677
Seca4g04047 677 SUPERFAMILY DNA-binding pseudobarrel domain 157 272 IPR015300 -
Seca4g04047 677 FunFam Auxin response factor 327 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04047 Seca-Chr4 72027293 72033257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04047 46 668 B3 DNA Binding Superfamily AT5G60450 58.372 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g04047 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04047 - - gmx:100783513 1142.1