Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04044 ATGATGTGTATAAAAGATCGTAACAATGTAATTACAATGAGACAATTAGTGTGTAACAAGGAGGGGGAGAGAAGTGAGAAGCATCTTAATAGGATTGATAGAAAAAGGGAGGCAAAGGCCATTACACGATCAAATTGTAAAGCAAGGCTCCGAATTCATTTAGATTATAAGAGTAGGAAGTGGATTGTTAGTTGTTTTGAGCCAGATCACAACCATGAATTGACACCTGCTAGTATGGTTCATTTGATGCCTGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGAAGGTCTTCATTTATATGGTGTGAGGACTTGCCATATTATGGGTCTTATAATGGGTCAGAAAGGGGGTTATTCAGATATTGGATTTTGTAAGAAAGATTTGTACAACCACATTGATAAGGTGAACAGGGCAAAAATTGAGGATGGTGCTTTTGCAGCCTTGTGTTACCTTCAGGCAAAGTATGATAACAATCCAATGACATTTGTAAAGTTTACAACCACTGAAGATGATAGACTTGAAAACTTGTTTTGGGCTGATGTAGGTAGTAGAATTGATTATATTTGTTTCGGGGATGTAGTTGCTTTTGACACCACATACAAGAAAAATAAGTATAACAGACCTTTAGTAATTTTTTGTGGTTATAACCATCATGGTGAAACCACTATCTTTGGTTGTGCACTTGTTGCTGATGAGAAGACTGAAACATATAAATGGGTCCTTGAAACATTCCTTGAAGCGATGTGCAATAAAGTTCCTAAGGTTGTGGTTACTGATGGAGATGGTGCAATGCGTGAAGCTATTAGGGCTGTTTTTCCTGGTGCTCTTCATAGGCTTTGTGCATGGCACCTTCATCAAAATGCTTGTGAGAATGTTAAAAATCCAAAATTTCTTGAAGACTTTAAGAATCTAATTTATGGTAATTTTACCAGAGAGAAGTTTGAGGATGAGTGGAACAAAGTTGTTGAGAAACATGGTGTTAGGGAAAATAAGTGGGTTAGAAAAGTTTATCAGCTGAAGAGGATGTGGGCCACTGCATATTTAAGGGACCACTTTTTTGGGGGGATTAGGACAACTTCTATATGTGAAGGAATAAACTCTTTTATTAAAAGCTATGTTCAAAGCAAAAATAGTCTTGTGGACTTTCTTCACAATTTTGAGAGGGCTGTCAATGAATATAGGCACAATGAGTTAACTTCAGATTTCAAGTCCACATACACTCAACCTGTGATGACAACAGCATTGGAGAAGTATGAACTTGAAGCTTCTAATGTTTACACGAGGAATAAGTTCTTTGATGTACGAAAGGAAATTGAAAAAGTTGCAGCCATTAATGTCATTGATAAGTCAGATGTTGGAAATGTAGTTACTTTGAGGTTGAAGAGATTTGGAAGTCCTGATAGTGAAAATGTAGTTCAGCTTGATAAGTCAAATGGTAATTTGCTTTGTGATTATCGTTTATTTGAATCTTGTGGCATCCTTTGTTCACATATATTTACTGCTATGAAGCATGAGCAAGTGGAATCCATTCCTGCATCTCTGATTTGCAAAAGATGGACCAAGTTAGCTATAGTTGACCACATTTCTGCTGTTTATGCTGAAGAAGGCGACACAACAAAGAAGGATTTAATGAGGTCTGGTGCTGTTGGTGCTGCATGTAACAGGCTTAACAAGGCTGCTCGTAGAAATCCTCACAATTTTGTCAGAAACATTGAATCTATTCATAAGTTAGCTGAACAGATGGAACGACAGGAAGGCATTGACTTGAACAGTGTTGATATGTCTCGAGTTGTGCGTGACCCTACAGTTGTTAAAACAAAAGGTGCTCCACGAAAGAATAAAAAAAGGACGAAGAAAATGAGATGTTCTTATTGTAAACGTGCAGGACACACAGTTAGGACATGCACAAAATATGCCACTCGTGATCAGTTGGATACAGTTGTTGAAGAGGAATCATCTGTTGAGACTAATGAAGACTCGAGAGACCAGAGTGTGTCTGTGAATCCTAATTTTTCCCGGGAAGTGAATCATGTATAA 2046 0.3778 MMCIKDRNNVITMRQLVCNKEGERSEKHLNRIDRKREAKAITRSNCKARLRIHLDYKSRKWIVSCFEPDHNHELTPASMVHLMPAYRGLSVADKAQVEGLHLYGVRTCHIMGLIMGQKGGYSDIGFCKKDLYNHIDKVNRAKIEDGAFAALCYLQAKYDNNPMTFVKFTTTEDDRLENLFWADVGSRIDYICFGDVVAFDTTYKKNKYNRPLVIFCGYNHHGETTIFGCALVADEKTETYKWVLETFLEAMCNKVPKVVVTDGDGAMREAIRAVFPGALHRLCAWHLHQNACENVKNPKFLEDFKNLIYGNFTREKFEDEWNKVVEKHGVRENKWVRKVYQLKRMWATAYLRDHFFGGIRTTSICEGINSFIKSYVQSKNSLVDFLHNFERAVNEYRHNELTSDFKSTYTQPVMTTALEKYELEASNVYTRNKFFDVRKEIEKVAAINVIDKSDVGNVVTLRLKRFGSPDSENVVQLDKSNGNLLCDYRLFESCGILCSHIFTAMKHEQVESIPASLICKRWTKLAIVDHISAVYAEEGDTTKKDLMRSGAVGAACNRLNKAARRNPHNFVRNIESIHKLAEQMERQEGIDLNSVDMSRVVRDPTVVKTKGAPRKNKKRTKKMRCSYCKRAGHTVRTCTKYATRDQLDTVVEEESSVETNEDSRDQSVSVNPNFSREVNHV. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04044 681 MobiDBLite consensus disorder prediction 649 681 - -
Seca4g04044 681 Pfam MULE transposase domain 196 290 IPR018289 -
Seca4g04044 681 Pfam FAR1 DNA-binding domain 7 75 IPR004330 -
Seca4g04044 681 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 569 IPR031052 GO:0006355
Seca4g04044 681 MobiDBLite consensus disorder prediction 662 681 - -
Seca4g04044 681 SUPERFAMILY Retrovirus zinc finger-like domains 611 642 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04044 Seca-Chr4 72017399 72021663 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g04044 MULE 1.6e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04044 - - tpra:123910662 729.169