Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04041 ATGCAGATATCCGGGGCCACTGATCTAGCATCAAAGGGACAAGGTGCATCAGATAGTAGTAATGTGAAGGTTAAAGGTGAAATTGACGATTCCTTTCAATCAGATCCAAAGATAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAAATGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAGCCTATGGAAGGCACCCCACCAGTTCCTGATAAATTTTATTGTGAAATCTGCCGACTCAATCGTGCAGACCCGTTTTGGGTTTCGGTGGCGCATCCTTTGCTTCCTGTGAAGCTGACCACAACCAGTATTCCAACTGACGGAACCAACCCGGTGCAGAGTGTGGAGAGAACATTTCAACTTACAAGAGCAGACAAGGACTTGGTATCAAGACCAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGCATTGTTAAAAGGCGCAACATGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCGTTTTGAAGATGCTCTTGCACGCGTTTGTCGTTGTGTTGGGGGCGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTAGAAGTGGTTTCAGATACTTTTAGCGTTAATCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAAATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATTCACTGGAGAATATCGTCATTGACCCGTATTTCAATCGCATCACTTCTATGATGGTAAATTGTGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGATCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGCCTGGATTTAGGGGATCTTGCACAATGGCACTTTCCTGATGGATCCCTCTGTGTTTCTACTGGTGGAGATATCAAAAGAGTAGAAACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCTAATGGTTTAAAACTTGGCATCAGAAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGACACAAACACCTCTTCTGGTAATAAATTAAAAGAGATTTTTGGAAATCCTGAACAGGTTGTTATTCCGATGAGCAGCAGCGCCACTGGAAGTGGCAGGGATGGTGATGATCCTAGTGTAAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCGCTGGGTCTCAATAATGTTGATTTAACATATGGATATACTGCACATAACACTTCCGCTCAGGTGGGGGGTGCAGAAGTAATTGTTCTTAGTGATTCTGAAGAAGACAATGATATATTGTTATCTCCTGCAATTGCATATAAGAGCAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGGACTTGTTAATTCATATACTGAAGATCAGAATCTTGGTGGAAATTCATGCTTGGGACTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCCTGTGGTCGTTGCCTCCTGGAACTCAGGCTGGTCCAGGATTCCAATTGTTTGGTTCTGATGCAGATGTGTCAGATGCTTTGGTCCATTTGCAACATGGTCCTATTAATTGCACATCATCACTGAATGGTTATGCATTGGCTCCAGATACTGCTTTGGGATCGAGTAGTCTCTTACAAGATCCCTCTAATGGTCGCTCAGATGCTGACTTAAATGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCATCTGTGCAGAATGAATTGAGAGATCAGGCAAATGTGTCTAATGGTGTCTGCACTGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTAGCAGTAATGGTGATGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAATCCCAGCCAGAGATGGTGCCGCAAATTCTTTGGCTGATACTGCTTCTTTGCTCCTTGGTATGAATGATGGTAGATCTGACAAAGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTATACCTTTCTATTGATTCAGATTCAGAGTAA 2418 0.4309 MQISGATDLASKGQGASDSSNVKVKGEIDDSFQSDPKIKIRCLCGSSLETEDLVKCDDPRCQMWQHISCVIIPEKPMEGTPPVPDKFYCEICRLNRADPFWVSVAHPLLPVKLTTTSIPTDGTNPVQSVERTFQLTRADKDLVSRPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTVCDARIFCLGVRIVKRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYSLENIVIDPYFNRITSMMVNCGEDVTEVEVKPDGSWRVKAKSESERLDLGDLAQWHFPDGSLCVSTGGDIKRVETLKQVKQEGVSDSPNGLKLGIRKNRNGVWEVSKPEDTNTSSGNKLKEIFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLGLNNVDLTYGYTAHNTSAQVGGAEVIVLSDSEEDNDILLSPAIAYKSNQNDTADGYSMPPPGLVNSYTEDQNLGGNSCLGLFPNEDDFGMSSLWSLPPGTQAGPGFQLFGSDADVSDALVHLQHGPINCTSSLNGYALAPDTALGSSSLLQDPSNGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDQANVSNGVCTEDWISLSLGGGAGSSNGDASTQNGLNSRHQIPARDGAANSLADTASLLLGMNDGRSDKASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04041 805 MobiDBLite consensus disorder prediction 727 744 - -
Seca4g04041 805 SMART PHD_3 41 93 IPR001965 -
Seca4g04041 805 Pfam PHD-finger 41 93 IPR019787 -
Seca4g04041 805 Pfam MIZ/SP-RING zinc finger 286 334 IPR004181 GO:0008270
Seca4g04041 805 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g04041 805 MobiDBLite consensus disorder prediction 465 481 - -
Seca4g04041 805 MobiDBLite consensus disorder prediction 441 457 - -
Seca4g04041 805 ProSitePatterns Zinc finger PHD-type signature. 42 92 IPR019786 -
Seca4g04041 805 MobiDBLite consensus disorder prediction 727 746 - -
Seca4g04041 805 MobiDBLite consensus disorder prediction 441 492 - -
Seca4g04041 805 FunFam E3 SUMO-protein ligase SIZ2 260 374 - -
Seca4g04041 805 SUPERFAMILY FYVE/PHD zinc finger 32 96 IPR011011 -
Seca4g04041 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 100 IPR013083 -
Seca4g04041 805 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 2 588 - -
Seca4g04041 805 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g04041 805 CDD PHD_Bye1p_SIZ1_like 41 92 - -
Seca4g04041 805 ProSiteProfiles Zinc finger SP-RING-type profile. 273 356 IPR004181 GO:0008270
Seca4g04041 805 CDD SP-RING_Siz-like 287 336 IPR031141 -
Seca4g04041 805 MobiDBLite consensus disorder prediction 767 805 - -
Seca4g04041 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 374 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04041 Seca-Chr4 71977808 71988742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g04041 PHD 5.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04041 - - gmx:100793735 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04041 4 71977808 71988742 Seca4g04041 4 71977808 71988742 ECH
Seca4g04041 4 71977808 71988742 Seca4g09178 4 217776576 217782838 PCT