Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04028 ATGGACTCGACCCAAGACTTGCAGTCCTTACTATCGGAGCAACGCCGAGAGCTCGCTGCTGCGGAAGCCATGGAATCCGACCTCGAATTCGCTTACCGCCTCCAGTTGCAGGAAGCCCTGGCCGCTTCCCTTACAACTCACCCCTCTTCCTCCTCCGTCGTCGTGCAAGAAGAGCCTGTCGTCGACGACACCGTTTTGAAGATCACGTCCCTCCAGTTGGAGGAGCTCGCGACGATGGAGCGCGAAATGAAAGACCGGGAGCAGAGCGAGACGGAGATGCGGAAGATGAGGGAGGATCTCAACCGTCGAATTCATGACCAGAAGATGGCGTCGGAGATCGTCACCATTCCTGAGGATGATTGGCTGCAATGGGGAGATAATTTCGAGAAGCCATTTGGAGAGGGTTCTTCGAAGAAGGGGGAGGACGAAGGTGCTATTGTTAGGGTTTATTTCAAGGGTTTGGTGAGTGAGGAGAGTGTGAGGGGTGACAAGGCGGTGTTGGCTGGGATTGGGGTTGCGATTTGTGACCTTTCTGACAATTTGATACTGGAAGTTTCCAAGCCTCTTATTGGTAATGGAACCGGCAAGGTTGCTACGGAGCTTAAGGCTTTGATTGAAGCCTTTAATGCTGCCATTGCTTTGGACTTGCAGCGCGTCATCTATTTTAGCGATTACTATCCCCTCTTTCAATTTGTAAGTGGAAAATGGCCTGCGAAACAGCGGAAGATTGCTATGCTAGTTCAACAGGTGAATCTGCTTCAAAGAAAATTTACATACTGCAGTCCAAGGCTTGTGGCCAGACACGATGTAAAGTTTGCATTTAAGCTCGCAAAAGATGCAATTGTTTCCCAGTCCACAAAGCCTGTGGAATCTGGCAGTAGTAAGAGTCTGAATGAAACTTGTGTCATATGTTTAGAAGATACTGATATCAATCAAATTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCCTGCATGAAACAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAAAATGCCCTCATGAGGGATGCAATTATGAGCTTCTACTTGACAGTTGCCGGAAATTCTTGACTCATAAACTAATTGAGACCATGCAGCAACGGAAAGTGGAAGCCTCAATTCCAGTTGCTGAGAAAATTTATTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAATACTCCAAAAATCTTATTGGTGACTCTGATCAATCAGGACCCAAGAAATGCGTGAAATGTCATGGTCTTTTCTGTTTCAGTTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAGAGGTTGAATCCTAACCCGCCAGCAGAAGACGTAAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATTTGATCGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGTTATGAATTTTGCTATAACTGTGGAGCTCAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGTCGAGGACAATATTTGGTTAGAAAATCATGAGGGGGAGTGGGAAGAAGAGGAAGAAGATCTTGATAGCGATGAAGAGGGATATGGTCATTATGGATTTTATTAA 1647 0.4608 MDSTQDLQSLLSEQRRELAAAEAMESDLEFAYRLQLQEALAASLTTHPSSSSVVVQEEPVVDDTVLKITSLQLEELATMEREMKDREQSETEMRKMREDLNRRIHDQKMASEIVTIPEDDWLQWGDNFEKPFGEGSSKKGEDEGAIVRVYFKGLVSEESVRGDKAVLAGIGVAICDLSDNLILEVSKPLIGNGTGKVATELKALIEAFNAAIALDLQRVIYFSDYYPLFQFVSGKWPAKQRKIAMLVQQVNLLQRKFTYCSPRLVARHDVKFAFKLAKDAIVSQSTKPVESGSSKSLNETCVICLEDTDINQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCNYELLLDSCRKFLTHKLIETMQQRKVEASIPVAEKIYCPYPRCSALMSKTEVLEYSKNLIGDSDQSGPKKCVKCHGLFCFSCKVPWHSGMTCYTYKRLNPNPPAEDVKLKSLATRSLWRQCVKCNHLIELAEGCYHMTCRCGYEFCYNCGAQWKDKKATCSCPLWVEDNIWLENHEGEWEEEEEDLDSDEEGYGHYGFY. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04028 548 FunFam RBR-type E3 ubiquitin transferase 439 546 - -
Seca4g04028 548 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Seca4g04028 548 SUPERFAMILY RING/U-box 456 518 - -
Seca4g04028 548 SUPERFAMILY RING/U-box 299 380 - -
Seca4g04028 548 FunFam RBR-type E3 ubiquitin transferase 147 284 - -
Seca4g04028 548 ProSiteProfiles TRIAD supradomain profile. 297 521 IPR044066 -
Seca4g04028 548 Coils Coil 4 24 - -
Seca4g04028 548 Pfam Reverse transcriptase-like 164 280 IPR002156 GO:0003676|GO:0004523
Seca4g04028 548 Gene3D - 439 546 - -
Seca4g04028 548 Coils Coil 79 99 - -
Seca4g04028 548 CDD Rcat_RBR_unk 467 502 - -
Seca4g04028 548 ProSiteProfiles Zinc finger RING-type profile. 301 345 IPR001841 -
Seca4g04028 548 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 222 523 IPR031127 GO:0004842|GO:0016567
Seca4g04028 548 SMART ibrneu5 368 441 IPR002867 GO:0008270
Seca4g04028 548 SMART ibrneu5 454 511 IPR002867 GO:0008270
Seca4g04028 548 Gene3D - 147 287 IPR036397 GO:0003676
Seca4g04028 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 381 IPR013083 -
Seca4g04028 548 FunFam RBR-type E3 ubiquitin transferase 296 381 - -
Seca4g04028 548 Pfam IBR domain, a half RING-finger domain 376 441 IPR002867 GO:0008270
Seca4g04028 548 Pfam IBR domain, a half RING-finger domain 459 509 IPR002867 GO:0008270
Seca4g04028 548 CDD BRcat_RBR_unk 381 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04028 Seca-Chr4 71754706 71759677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04028 148 500 C3H Transcription Factor Family AT2G19610 35.196 1.93e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04028 - - aprc:113858620 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04028 4 71754706 71759677 Seca4g04028 4 71754706 71759677 ECH