Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04026 ATGATAACAAAACAATTAAGCTTCTCTTCCCATTTCCTAAAATACACAAAGAAACAGATAGAAAAACCAAAAGTGAAGATTCAAGAATTGAGAAACATGGAAAGCAGTGGCAGTGACACATACACCCCTACTTCCTCTGCCCCACTTTCTCAATCTCCAACTTCCTCATCTTCCTCACCACCTCCACCTCCTCAAGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAAAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCTCACAGAGTCTTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAGCTTCCAGAGTCTCAAAGAGCAGATGCAGTGACTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCGGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAACAGGTCAATGAGCTTCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTAAACATGCAATTGCAGCAAGCCAATCTTGTGGCTTTAATTTGCATGGAAATGGCACAAAGTCCACAGGAATCACCACAACAATCAGTGGATAATTTCATTACAAGTCCTCCACACAGCACTGGCTATCAAAATGGTATGAACTTCCTTGAGGAGAACACTAGCCTAAACTCATTGTGGGAGCCACTTTGGACATGA 708 0.4379 MITKQLSFSSHFLKYTKKQIEKPKVKIQELRNMESSGSDTYTPTSSAPLSQSPTSSSSSPPPPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAQSPQESPQQSVDNFITSPPHSTGYQNGMNFLEENTSLNSLWEPLWT. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04026 235 MobiDBLite consensus disorder prediction 31 54 - -
Seca4g04026 235 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Seca4g04026 235 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
Seca4g04026 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 69 198 - -
Seca4g04026 235 MobiDBLite consensus disorder prediction 26 64 - -
Seca4g04026 235 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04026 Seca-Chr4 71685008 71687021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04026 65 235 AS2 family AT1G07900 67.241 3.17e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g04026 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04026 - - gmx:100789504 318.931