Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04023 ATGGGTGATAATGTTGATGGTATCAGTAACGGTAGTGGTGGATTGGAAAATATAGAGGAGGTAACTGAAGATGTTGTTGAGGTTCATAACATCCTTGAGGGGATGGGCTTTGATAGTGAAAAAGACTTTCCGATTATTGACCCCATGTTGCTTAGTAGCAATCTTGTGAGCACTTTTCATTTCTCTGACTTAGAGGTGGCTTATGAGTTTTACAATTGGTATGGAAGAATGAAAGGATTCTCGGCAAGGAGGGGCAAAGTTCGAAAAAACAGGGATAAAGAAATTTTGGAGAAGACATTCTTCTGTCATAGGGAAGGAAAGAGGAAGAAAAAAAATGATGATGATGAGGAGGAGGAGGAAGTAGTGCGTGAACCTAGACCTGAGACAAGAACAGAATGTAAAGGATTGATGAAGGTCCGTGTTGATTGTGTTAGTGGGAGGTGGCATGTTTGTAAGTTCATTGAAGAGCACAACCACAGACTATTGAAAAAAATACATACATCAATGTTGCCTGCCCATAGGAAAATGACTGATGCGGATATAATGCAACTGAACAATTTGCGTAAGGTTGGCATAAGCACACCCCACATATATGGATCTTTTGCAAGCCAGTCAGGTGGATTTCAGTATGTTGGATTTTCTAAAAGAGACATGTATAACCAGATTGGTAGGCAAAGGATGATGCAGGCTACGGATGTAAAGGGTGCATTTCAATACCTACGTGATATTGGTAATTGTAATGGACCTATGTTTTGGAGCCATACTATTGATAATGAAGGTAGGCTTGATCGTTTATTTTGGTGTGATGGACATAGTCAGATTGACTACAAAGTGTTTGGTGATGTGTTAGCATTTGATGCTACTTACAAAAGGAATAAATATCATTTCCCCTTGGTGGTGTTTTCTGGTATTAACCATCACAACCAGACTACTATTTTTGCCAGTGGTGTTATTGCAAATGAAACTGAAGATACATATGTGTGGTTACTTGAACAGTTGATGGTTGCAATGAAAGGGAAGGCGCCTCTATCAGTAATTACGGACAGAGATTTGGCAATGAGGAATGTTATCAAGAGAGTATTTCCAAATGCACATCACAGGTTATGCACATGGCATCTGTTACGGAATGCTAATTGTAATGTGAAGAATGCAAAATTCCTTGCGGGGTTAAAGAGGTGCATGCTTGGTGATTATGAGATTTATGAGTTCCAGAGAAAGTGGTCTCAAATTGTTACAGAGTGTGGACTTGAGGAAAATACTTGGGTCAAAGAAATGTATGAGAAAAGGCGCAGGTGGGCATCTTGCTATATTAGGGGTCAATTCTTTGTAGGAATAAGGACTACATCACGGTGTGAGGGGCTCCATGCTCAACTTGGGAGGATGGAGTCTTTTGGCCTTCCATGTGAACATATTGTAGGTGTGTTGGTTCATCTAAACATTAATGAGATTCCTAGTTGTATTGTTCTTGATAGATGGACAATGGCTGTGAAAGAAAAAATGTATGAGTTGTGTGATCAACGTAGCTCAATGTGGGATTCTGTTTTTATGGCTCGATGTGGGTGTTTAGATGCTTTGTCTAGAAAAGTTAACAGGTTGGTTGCGAAGTCAACTGTTAGATTTAATGCCATGAGAGATCTACTCACTGAGCAACTTAAGAAGATGGAAGACACAAATGAAGGGAACAATGAAGAGAATGAAGCTTGCAATCAATCAACACACAGAGAGGTGAGGGATCCAGTTAGAGTTGGTAGCAAGGGGTGTGCTGTCAATTCATCACCGAATTGTTCTCAAAAAAAGCGACGACAAAAGTGTGGCCTATGTGGTAAAGTCGGTCATAATAGGAAGACATGTTTGCTAAAGAGTAATTTTGACCATGGCATGATGTCTCAGGAGGCTTCCTGTATGCACTATGAAGAATTTGATAACTGTGAAGGCTAA 1938 0.4004 MGDNVDGISNGSGGLENIEEVTEDVVEVHNILEGMGFDSEKDFPIIDPMLLSSNLVSTFHFSDLEVAYEFYNWYGRMKGFSARRGKVRKNRDKEILEKTFFCHREGKRKKKNDDDEEEEEVVREPRPETRTECKGLMKVRVDCVSGRWHVCKFIEEHNHRLLKKIHTSMLPAHRKMTDADIMQLNNLRKVGISTPHIYGSFASQSGGFQYVGFSKRDMYNQIGRQRMMQATDVKGAFQYLRDIGNCNGPMFWSHTIDNEGRLDRLFWCDGHSQIDYKVFGDVLAFDATYKRNKYHFPLVVFSGINHHNQTTIFASGVIANETEDTYVWLLEQLMVAMKGKAPLSVITDRDLAMRNVIKRVFPNAHHRLCTWHLLRNANCNVKNAKFLAGLKRCMLGDYEIYEFQRKWSQIVTECGLEENTWVKEMYEKRRRWASCYIRGQFFVGIRTTSRCEGLHAQLGRMESFGLPCEHIVGVLVHLNINEIPSCIVLDRWTMAVKEKMYELCDQRSSMWDSVFMARCGCLDALSRKVNRLVAKSTVRFNAMRDLLTEQLKKMEDTNEGNNEENEACNQSTHREVRDPVRVGSKGCAVNSSPNCSQKKRRQKCGLCGKVGHNRKTCLLKSNFDHGMMSQEASCMHYEEFDNCEG. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04023 645 Pfam FAR1 DNA-binding domain 69 162 IPR004330 -
Seca4g04023 645 Coils Coil 544 564 - -
Seca4g04023 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 457 IPR031052 GO:0006355
Seca4g04023 645 MobiDBLite consensus disorder prediction 554 575 - -
Seca4g04023 645 Pfam MULE transposase domain 282 376 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04023 Seca-Chr4 71624869 71627324 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g04023 MULE 3.8e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04023 - - tpra:123913749 484.182