Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04013 ATGGCCGGCGTTAATCCGAACGGCGGAGTCGCCGATTTTCCGGCGGTTCAAACGCACGGTGGACAGTTCATTCAGTACAACATATTCGGTAACCTCTTCGAGGTTACGGCCAAGTACCGTCCTCCGATCATGCCTATTGGTCGTGGCGCCTATGGAATCGTTTGTTCTCTGTTGAATACGGAGACGAATGAGTTGGTGGCTGTTAAGAAGATTGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTCCGTGAGATTAAGCTTCTTAGACATTTGGATCACGAAAATGTAATTGGTTTAAGAGATGTTATTCCCCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAGCTACTGAACTCATGGATACCGATCTTCACCAAATCATTCGCTCCAATCAAAGTCTGTCAGAGGAGCACTGCCAGTACTTCTTGTATCAAATTCTTCGTGGACTAAAGTATATACATTCTGCAAACATAATCCATAGGGATTTGAAACCAAGCAACCTGTTGCTGAATGCAAATTGTGACTTGAAGATTATTGATTTTGGTCTTGCACGGCCAACTATAGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTACAGGGCTCCCGAATTGTTGTTGAACTCCTCAGATTACACCTCAGCGATAGATGTGTGGTCTGTTGGTTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTCTTTCCAGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACTCCAACTGAGGCAGACCTCGGGTTAGTGAAAAATGAAGATGTGAGAAGATATATCCGACAACTTCCTCAATATCCTCGCCAGCCTTTACATAAGGTCTTCCCCCATGTTCATCCCATGGCCATTGATCTCATTGATAAAATGTTGACAGTTGATCCAACCAGAAGAATTACAGGTAACTTTCTCATTCCTTTTATTCATTTATGTTTCTGTAGCCAGATGAAGCAACATGCAGGTTCATTTTGA 1020 0.4353 MAGVNPNGGVADFPAVQTHGGQFIQYNIFGNLFEVTAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNANCDLKIIDFGLARPTIESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTEADLGLVKNEDVRRYIRQLPQYPRQPLHKVFPHVHPMAIDLIDKMLTVDPTRRITGNFLIPFIHLCFCSQMKQHAGSF. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04013 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 317 - -
Seca4g04013 339 FunFam Mitogen-activated protein kinase 124 334 - -
Seca4g04013 339 Gene3D Phosphorylase Kinase; domain 1 23 123 - -
Seca4g04013 339 SUPERFAMILY Protein kinase-like (PK-like) 45 317 IPR011009 -
Seca4g04013 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Seca4g04013 339 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Seca4g04013 339 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04013 339 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca4g04013 339 Pfam Protein kinase domain 45 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04013 339 Gene3D Transferase(Phosphotransferase) domain 1 124 317 - -
Seca4g04013 339 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04013 339 FunFam Mitogen-activated protein kinase 25 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04013 Seca-Chr4 71528896 71533314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04013 4 316 MAP Kinase Gene Family AT3G45640 85.669 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca4g04013 Pkinase 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04013 K20536 - gmx:100801339 616.69