Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04011 ATGGGAAAGTCCTACCCAACCGTGAGCCCTGATTACCAGAAGGCCGTTGAGAAGGCCAAGAAGAAGCTTAGGGGTCTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGTACCTTTGACGTGAAGACAAGGACCGGTGGTCCCTTCGGAACCATGAAGCACTCAGCTGAACTTGCCCACGGTGCTAACAACGGTCTTGATATCGCTGTTAGACTATTGGAGCCGCTCAAGGAGCAGTTCCCTATTTTGTCCTACGCTGATTTCTACCAGTTGGCTGGTGTTGTTGCCGTTGAGGTCACTGGTGGACCTGAAGTTCCTTTCCACCCCGGAAGAGAGGTATATTGCAAGTTTTTAACCATCTCTATTTGCTTCTCTTTGTTTACTTTACTAGATGATGATTATATTTCCCAATCTGATTTGATTTCTTTTTGTTTGTTTTTGGACAAGCCCGAGCCACCACCTGAGGGTCGCCTGCCTGATGCAACCAAGGGTTCTGACCATTTGAGGGATGTATTTGTCAAAGCTATGGGGCTTACTGATCAGGATATTGTTGCTCTTTCTGGTGGCCATACCATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGTCCCTGGACTTCTAATCCTCTTATTTTTGACAACTCATACTTTAAGGAGCTGTTGAGTGGTGAGATGGAAGGCCTCCTTCAACTTCCAAGTGACAAGGCACTCTTGAATGACCCAGTTTTCCGTCCTCTTGTTGAGAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTACGCTGACGCTCATCAAAAGCTCTCTGAACTTGGGTTTGCTGTTGCCTAA 858 0.4744 MGKSYPTVSPDYQKAVEKAKKKLRGLIAEKRCAPLMLRLAWHSAGTFDVKTRTGGPFGTMKHSAELAHGANNGLDIAVRLLEPLKEQFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREVYCKFLTISICFSLFTLLDDDYISQSDLISFCLFLDKPEPPPEGRLPDATKGSDHLRDVFVKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFKELLSGEMEGLLQLPSDKALLNDPVFRPLVEKYAADEDAFFADYADAHQKLSELGFAVA. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04011 285 ProSitePatterns Peroxidases active site signature. 33 44 IPR019794 GO:0004601
Seca4g04011 285 CDD ascorbate_peroxidase 5 282 - -
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 109 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 12 32 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 51 61 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 33 48 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 65 89 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Plant ascorbate peroxidase signature 90 108 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 FunFam L-ascorbate peroxidase, cytosolic 167 274 - -
Seca4g04011 285 ProSiteProfiles Plant heme peroxidase family profile. 74 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Haem peroxidase superfamily signature 33 47 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Haem peroxidase superfamily signature 91 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Haem peroxidase superfamily signature 109 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PRINTS Haem peroxidase superfamily signature 214 229 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 Gene3D - 2 121 - -
Seca4g04011 285 SUPERFAMILY Heme-dependent peroxidases 5 281 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Seca4g04011 285 Pfam Peroxidase 20 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g04011 285 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 10 281 IPR044831 GO:0004601|GO:0034599
Seca4g04011 285 Gene3D Peroxidase, domain 2 167 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04011 Seca-Chr4 71496380 71500297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04011 5 281 Peroxidase AT4G17690 26.899 6.30e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04011 K00434 - gmx:606508 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04011 4 71496380 71500297 Seca4g04011 4 71496380 71500297 ECH