Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04004 ATGTTAGATCTTAATCTCAATGTGAACTCGACCGATTCGACTCAGAACGGCGACTCGTCGGTGCTTTTGGAGAAGCTTCATGAAGGTTCCTGGAACCAAATGGCGGAGTCAGGGACCTCGAATTCCTCCGTCGTCAATGCGGACGGGTCTAGCAACGGCGCAGGCGACGAGGACTCGTGCTCCACGCGCGCCGACGACGTGTTCACCTTCAATTTCGATATCCTTAAGGTGAAAGGCCCAAACGACGTCGTAACGAAGGAGTTGTTCCCGGTGAGTGGAGGAGCTAAAGGAGTGGATGAAGGCGGGTCCGGGAATTGGCAGTGGCAGGCTACGTCGTCGTTTCCGCCGAGGAATAATGGCTCGGTGGATCTCTCGTTCGATCGCCAGGGTGGGAACAGCGAGATGAAGATGGTTCAGCCTCAGCAACAACCGAAGAAGAGTAGAAGGGGACCAAGGTCTCGTAGCTCGCAATACAGAGGGGTCACCTTTTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCCCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGACGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGTAATGGTTTCTCGAGGGGGAGCTCAAAATACCGAGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTCGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGGTGGCAGTCAAAATCTCGACCTCAATTTGGGCATAGCAACCCCAAGACCTGGTCCCAAAGAAAATTGGGGGCAACTTCAGTTCTCCTCTGTCCCTTACAACATGCACGCTGGAAGAAGTTCAAGGGTAAAGTTGAACTTTACAGCTTCATTTTATTTTAGGCTTTCTTCTAAAGCGGCAGAAAGGTTAATAGCACTCTTTAGGCTCTCAAATTAG 1179 0.4885 MLDLNLNVNSTDSTQNGDSSVLLEKLHEGSWNQMAESGTSNSSVVNADGSSNGAGDEDSCSTRADDVFTFNFDILKVKGPNDVVTKELFPVSGGAKGVDEGGSGNWQWQATSSFPPRNNGSVDLSFDRQGGNSEMKMVQPQQQPKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGSQNLDLNLGIATPRPGPKENWGQLQFSSVPYNMHAGRSSRVKLNFTASFYFRLSSKAAERLIALFRLSN. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04004 392 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 MobiDBLite consensus disorder prediction 104 146 - -
Seca4g04004 392 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Seca4g04004 392 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Seca4g04004 392 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Seca4g04004 392 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Seca4g04004 392 MobiDBLite consensus disorder prediction 95 158 - -
Seca4g04004 392 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Seca4g04004 392 MobiDBLite consensus disorder prediction 33 58 - -
Seca4g04004 392 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Seca4g04004 392 MobiDBLite consensus disorder prediction 33 60 - -
Seca4g04004 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 334 - -
Seca4g04004 392 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04004 Seca-Chr4 71351302 71354019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04004 73 332 AP2-EREBP Transcription Factor Family AT4G36920 65.683 1.24e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca4g04004 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04004 K09284 - gmx:100788303 550.821