Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04001 ATGCTGTTGGTGGATGAAGAGAAGATAAGAATTCATGCATATGTGAAAAAAGCGTTGATTACAACATTTGAAGGAACTTTGAAAGAAGGCAGTGCTTATGTAATGGAAAATCTGTTAGTTGCTGAAAATAAGATGAAGTTCAAAACCACCAGCCATGCATATAAGTTCGGGTTTATGCAAAGCACTCGAGTAACTGAAATTGAAGCTGACAATATTCCATCACATTCGTTCCTCTTTGTGCCATTTCCTGATATCCTGGCAGGATCTAATGAATTTGTTCTAATGGATGTAATTGGCCATGTTGTACAACGATATGACCTCAAGGAATCTGAAAAAGGTGGGAAAATAAATAAGCATATGGAGATCATACTTGAAGATTTAGAGCACAACAAACTTATGTGCACTTTGTGGGATGATTTTGCTACTACAATGGACCAGTTCCTTACAAATATGTCAAGTAACATTGTTGTTATTGTCATTTTGCAACTGTGTAAGCGCAATGTGTTCAATGTTTGCAGGAAAAATGGGCATCTCTAA 537 0.365 MLLVDEEKIRIHAYVKKALITTFEGTLKEGSAYVMENLLVAENKMKFKTTSHAYKFGFMQSTRVTEIEADNIPSHSFLFVPFPDILAGSNEFVLMDVIGHVVQRYDLKESEKGGKINKHMEIILEDLEHNKLMCTLWDDFATTMDQFLTNMSSNIVVIVILQLCKRNVFNVCRKNGHL. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04001 178 CDD RPA1_DBD_A_like 1 64 - -
Seca4g04001 178 Gene3D - 70 175 IPR012340 -
Seca4g04001 178 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
Seca4g04001 178 Pfam Domain of unknown function DUF223 2 87 IPR003871 -
Seca4g04001 178 SUPERFAMILY Nucleic acid-binding proteins 79 159 IPR012340 -
Seca4g04001 178 Gene3D - 1 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04001 Seca-Chr4 71232121 71233394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04001 3 163 Core DNA Replication Machinery Family AT5G08020 28.916 5.55e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04001 - - tpra:123896123 163.696