Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04000 ATGTGGGAAATTACTTTGACAAAGGCAGCTGCATCCGGTGCTAACGCTTTGGTCATACCTGCTAGGATTGTGAGGGACATATTGGACAAGAATCAGGAAGTTGTGAATGTTATAGATGAGGGTGGTGAATTAATTCCATGCAAGCTTCTGAAGCCTAAAAGACGACCAAGTGAACGGTACCTATCCAGTGGGTGGTATGATTTTATTCGGGGAAAGAAATTGAAGGCTGGTGATAAGATAAGATTTTACTCAGATGATAGTATGAAATCTTTGTCTGCGGTTGTAGATCGCATTTGA 297 0.4141 MWEITLTKAAASGANALVIPARIVRDILDKNQEVVNVIDEGGELIPCKLLKPKRRPSERYLSSGWYDFIRGKKLKAGDKIRFYSDDSMKSLSAVVDRI. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04000 98 SUPERFAMILY DNA-binding pseudobarrel domain 2 91 IPR015300 -
Seca4g04000 98 Pfam B3 DNA binding domain 3 90 IPR003340 GO:0003677
Seca4g04000 98 CDD B3_DNA 5 87 IPR003340 GO:0003677
Seca4g04000 98 Gene3D - 1 97 IPR015300 -
Seca4g04000 98 ProSiteProfiles B3 DNA-binding domain profile. 2 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04000 Seca-Chr4 71226881 71230440 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g04000 B3 1.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04000 - K14486 lja:Lj6g3v0497350.1 53.9138