Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03994 ATGGAAAATAATGCTACTGAATCTGAGAAAATGAAAGGGAAAGGGATTCCCGTTCACGGAGGGAAGTACATGCATTACAACATCTTGGGCAACCTTTTCGAGGTCTATGCTAAATACGCTCCCCCTCTCCAACCCGTTGGACGCGGCGCATACGGCATCGTTTGTTGTGCAACGAATTCGGAGACGAAAGAAGGCGTTGCAATAAAGAAGATCGGAAATGCCTTTGACAACCGGATTGATGCTAAGAGGACACTCAGAGAAATCAAACTTCTTTGCCACATGGATCATGATAACATAATTAAAATTAAGGACATCATTAGGCCACCAGATAGGGAAAATTTCAATGATGTGTATATTGTGTACGAATTGATGGATACTGATCTGCATCAGATTATTCAATCTAACCAGGCTCTCACGGATGAGCACTGTCAGTATTTTCTATATCAACTCCTGAGAGGTTTGAAGTACATACACTCTGCCAACGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTCAATGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTTGCCAGAACAACCTCTGAGACAGACTTTATGACAGAATATGTTGTGACTCGTTGGTACAGAGCCCCTGAATTGCTACTGAATTGTTCAGAATATACTGCAGCTATTGATATATGGTCTGTTGGTTGCATTTTGATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTTCAGCAGTTGGCTCTCATAACTGAGGTATTTGTCCTATCACTTCAATACTGTCTGTTTGTCAAATTGCAGTTACTAGGTTCACCAAATGACTCAGATCTTGGATTCCTTAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTCCCACATGTAGAAAAACAGCCCTTTTCACAGCGGTATCCTGATGTATCCCCGTTGGCAATTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCCAAACGCATAACTGTCGAGGAAGCACTGAATCACCCATATATGTCAAGTCTTCATGAGATCAACGAGGAGCCCACTTGTCCAACTCCTTTTGTCTTTGATTTCGAACAGACAATTCTGAATGAAGAAGATATAAAGGAACTCATATGGAGGGAGTCTCTGAACTTCTGCCAGGATCAGATGCTGGAATAG 1170 0.4111 MENNATESEKMKGKGIPVHGGKYMHYNILGNLFEVYAKYAPPLQPVGRGAYGIVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIRPPDRENFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITEVFVLSLQYCLFVKLQLLGSPNDSDLGFLRSDNAKKYVKQLPHVEKQPFSQRYPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYMSSLHEINEEPTCPTPFVFDFEQTILNEEDIKELIWRESLNFCQDQMLE. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03994 389 Pfam Protein kinase domain 44 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03994 389 SUPERFAMILY Protein kinase-like (PK-like) 43 347 IPR011009 -
Seca4g03994 389 ProSiteProfiles Protein kinase domain profile. 40 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03994 389 FunFam Mitogen-activated protein kinase 25 134 - -
Seca4g03994 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Seca4g03994 389 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Seca4g03994 389 Gene3D Phosphorylase Kinase; domain 1 23 378 - -
Seca4g03994 389 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca4g03994 389 Gene3D Transferase(Phosphotransferase) domain 1 124 368 - -
Seca4g03994 389 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 342 - -
Seca4g03994 389 SMART serkin_6 40 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03994 389 FunFam Mitogen-activated protein kinase 124 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03994 Seca-Chr4 71106299 71110199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03994 9 382 MAP Kinase Gene Family AT1G07880 76.203 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca4g03994 Pkinase 6.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03994 K04371 - gmx:100802929 691.419