Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03993 ATGAACAATAATGTTGGGAAACGAAGTTTGGCAGAACAAAATCATATGTTTTTTGATGAAAAGAGTCTCAATAGTGGAGTAGTTAATGGAGGGTTAGGCTCTGGATCATCAACAGAAGATGACAAAAGATTTAATAAGGTAACCCAAGTTGGAAGCAATGGATTGAGGGGACTGATTCAAATCCATGAGAGCTTGCAGAATTCCCAACAACCACCTCAAGGTCCAGTCATATGCTGGGAGAGATTTCTCCCTGTAAGATCAATAAAAATTCTGCTGGTAGAAGATGATGATTCAACACGCCATGTTGTCCGTGCTCTGTTACGGAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAGTCCTAGAAGATCCAGGAAATCACATAGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTTTAAAGAATATCCCCGTGATTATGATGTCATCTCATGATTCAATGGGTATAGTCTTTAAGTGTTTATCAAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTGTGAGTTGCTTTACATTTCTGTATCAGGCATGTAATGAAACAAATGTCAATGTTGTTTCCTAG 699 0.3891 MNNNVGKRSLAEQNHMFFDEKSLNSGVVNGGLGSGSSTEDDKRFNKVTQVGSNGLRGLIQIHESLQNSQQPPQGPVICWERFLPVRSIKILLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPGNHIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSVSCFTFLYQACNETNVNVVS. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03993 232 FunFam Two-component response regulator-like PRR37 88 229 - -
Seca4g03993 232 Pfam Response regulator receiver domain 90 201 IPR001789 GO:0000160
Seca4g03993 232 SUPERFAMILY CheY-like 86 213 IPR011006 -
Seca4g03993 232 CDD psREC_PRR 90 193 - -
Seca4g03993 232 Gene3D - 87 215 - -
Seca4g03993 232 SMART REC_2 88 203 IPR001789 GO:0000160
Seca4g03993 232 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Seca4g03993 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 89 213 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03993 Seca-Chr4 71059987 71063079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03993 35 211 Response Regulator Gene Family AT5G60100 67.797 3.78e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g03993 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03993 K12129 - gmx:100785796 379.793