Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03992 ATGCTTGGAGAATGGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCTCCTCATAAACAATTGGCCGATGCCCCTGATAGCACGTGTGCCCAAGTGATGCATACAAAGCCTGAAAAAATCAGTAGTATATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTAATTGATCATCTTGATGATGTCGCAATGGGTAAAGACTTGGCTATGGGAATATCTTTGAATATTCAACTAGAGCGTCCACCTGAGGAACTGTCTAGCAATCCAATGGGTAAAGGGACAAATAAGATGTCTGATATGGATCGCATGCAGCTGATTAAAGGACAGAGTAATGTCTGTGAAAAAGGAAAACTGGAATACAACGGTGATAAAACCAGGACACAGGAAAATCAAGCTATGAATGTTGTTGATGTTACTGATAGCAACAGTCCACAGGCTAAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGCTTCTCACAAACAAAAGCAAGCAGTTCCTTCAAACAGCATCCATCCCTTGAACTAACTTTGAAGAGGCTGGGAGAAGTAAGAGATGTTAAAAATGTCACAGGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAATCAGGCTCAAACTGGAAATGTTGGAAGCTGTTCCCCCCTAGACAATAGCTCAGTTGCACCAAATACAGAGATAATACACAACTTTCCATCTAATTCAAATGGCACACCTCGAAATCAACAGTCTAATGAGAGCAACAACATCAATGACATGGCCTCCACTAATACATATCTTAGCACTAAACCTGTAACTTTTGACAAGAAGCCAGAGTCTGTAAGAGGGATTGGCTCATTTAATTCTTCTGAACTCCAGACTGTGCAGAACAATAGTATCTCTTCATCTCAGAAGAAAACTTCTGCCCAAGAAGAATATGCAGAAATTGTTAAAGGACAAGTGGGAGGCTCTGAACAAGGATTCCAAGTCGAGCACACTCATTATCAGCTTCAGCATCATAATCACATTGCCCATAGAGCCACAGTAGATCTCCAATCAGACCATGATCTTTTACGAAAAAGCTCAAGCAAAGCTGCTCAGCAATGTGTATCATCAAATGCGTTTGGACCAGCAGAAAGCAATGCTGCAAACTATGGGTTGGATGGAAATGCAGCTGAGAGCGATCATGGGAGCAATGGACAGGACGGAAGCAATAGCTTGACAATAAGAACAATGAATATGGAGAATGGCAATGTGGCTGCTGGGAGTTTTGGAGTTGGTGGCATTGATAGGATAAACATTGTGAATGGGGTAGATGAAGGACGGATTGCGTTGAGAGAGGCTGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAAAAGAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATAAGGGGGCAATTTGTAAGACGAATAGTGTCCAATACCATAGAAGAAAGAGATAAACAAAGCGACAACCTGGCATCTATGGATAATTCTAGCGACGTTCAACAATAA 1587 0.4165 MLGEWSSWTKCLAQVGSPHPVSPHKQLADAPDSTCAQVMHTKPEKISSIWVHATEKECHELIDHLDDVAMGKDLAMGISLNIQLERPPEELSSNPMGKGTNKMSDMDRMQLIKGQSNVCEKGKLEYNGDKTRTQENQAMNVVDVTDSNSPQAKSRDLNTPNGFSGFSQTKASSSFKQHPSLELTLKRLGEVRDVKNVTGDECNILRHSDLSAFSKYNTASSANQAQTGNVGSCSPLDNSSVAPNTEIIHNFPSNSNGTPRNQQSNESNNINDMASTNTYLSTKPVTFDKKPESVRGIGSFNSSELQTVQNNSISSSQKKTSAQEEYAEIVKGQVGGSEQGFQVEHTHYQLQHHNHIAHRATVDLQSDHDLLRKSSSKAAQQCVSSNAFGPAESNAANYGLDGNAAESDHGSNGQDGSNSLTIRTMNMENGNVAAGSFGVGGIDRINIVNGVDEGRIALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSNTIEERDKQSDNLASMDNSSDVQQ. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03992 528 MobiDBLite consensus disorder prediction 243 272 - -
Seca4g03992 528 MobiDBLite consensus disorder prediction 146 171 - -
Seca4g03992 528 MobiDBLite consensus disorder prediction 407 421 - -
Seca4g03992 528 ProSiteProfiles CCT domain profile. 459 501 IPR010402 GO:0005515
Seca4g03992 528 MobiDBLite consensus disorder prediction 399 421 - -
Seca4g03992 528 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 523 IPR045281 GO:0009909
Seca4g03992 528 Pfam CCT motif 459 500 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03992 Seca-Chr4 71035473 71041077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03992 3 506 Response Regulator Gene Family AT5G02810 34.091 1.73e-45 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g03992 CCT 1.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03992 K12129 - gmx:100785796 688.337