Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03991 ATGGGTTGCTTTTGTTTCCCAGGGAAATCAAGGGAAAAATCGGTGACCGAAGACTATGGCCACACCCAGAAGCCCACCAATTTAACTGCTGCAGGTAATGCCAAAGTTGATTTCCAAGTAAATGGGAAAAAAGAAGATAGTTCTAAGGATGATCAACTTGCTCTGGACGTGAAGAATTTAAATATAAAGGAGGAGGTTTCCGAGGGTGGACAAAATAATGGTCAGCGGGCACAGACATTCAGTTTTAATGAACTTGAAGTTGCAACAGGAAATTTTAGGTCGGATTGCTTTTTGGGTGAGGGAGGCTTTGGCAAGGTTTACAAGGGGCACTTGGAGAAAATAGACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTAACATTGAGTATGGCAGACCACCCAAATCTTGTCAAGTTGCTTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTACGAATACATGCCATTGGGATCTTTAGAGAACCATTTACTTGGTGGCTCATATCATTTCCTCTCCCCCATTAACTCAGATCTTCCGCCTGGTAGAAAACCACTTGATTGGAATACAAGAATGAAAATAGCAGCTGGTGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAATGCTCGAACATTTTGTTAGGTGAGGGCTATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAATTGGTGATAAGACCCACGTTTCAACAAGGGTTATGGGCACATATGGGTACTGTGCCCCAGATTATGCAATGACTGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCTATTGACCATACAAAACCTGCCAAAGAACAAAATCTGGTTGCATGGGCAAGACCTTTATTCAGAGATAGGAGAAAATTCTCACAAATGGTTGACCCATTGCTTGAAGGTCAATATCCTGTGAGAGGTTTATACCAAGCTCTTGCTATTGCAGCAATGTGTGTTCAAGAACAGCCTAATATGCGGCCTGTTATAGTTGATGTGGTTACAGCTCTAAATTACCTTGCTTCCCAGAAGTATGATCCCTCAGTCCATCCAGTACAAGGCTCTAAAAGTCCATCTCCGAGAGTGAAAAAGGATGATGATCATAGACACATTTTTAGTAATGATGAAACAGACAGATCAGTAAACTAG 1272 0.423 MGCFCFPGKSREKSVTEDYGHTQKPTNLTAAGNAKVDFQVNGKKEDSSKDDQLALDVKNLNIKEEVSEGGQNNGQRAQTFSFNELEVATGNFRSDCFLGEGGFGKVYKGHLEKIDQVVAIKQLDPNGLQGIREFVVEVLTLSMADHPNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLLGGSYHFLSPINSDLPPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPSVHPVQGSKSPSPRVKKDDDHRHIFSNDETDRSVN. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03991 423 SUPERFAMILY Protein kinase-like (PK-like) 81 387 IPR011009 -
Seca4g03991 423 CDD STKc_IRAK 98 379 - -
Seca4g03991 423 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Seca4g03991 423 SMART serkin_6 92 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03991 423 MobiDBLite consensus disorder prediction 10 30 - -
Seca4g03991 423 FunFam probable serine/threonine-protein kinase RLCKVII 63 168 - -
Seca4g03991 423 MobiDBLite consensus disorder prediction 400 423 - -
Seca4g03991 423 PANTHER OS07G0668900 PROTEIN 49 389 - -
Seca4g03991 423 MobiDBLite consensus disorder prediction 388 423 - -
Seca4g03991 423 Gene3D Transferase(Phosphotransferase) domain 1 169 394 - -
Seca4g03991 423 Pfam Protein tyrosine and serine/threonine kinase 97 316 IPR001245 GO:0004672|GO:0006468
Seca4g03991 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Seca4g03991 423 FunFam Serine/threonine-protein kinase PBS1 169 396 - -
Seca4g03991 423 ProSiteProfiles Protein kinase domain profile. 92 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03991 423 Gene3D Phosphorylase Kinase; domain 1 61 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03991 Seca-Chr4 71015772 71019846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03991 1 383 Glycoside Hydrolase AT3G07070 54.286 2.06e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca4g03991 PK_Tyr_Ser-Thr 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03991 - - gmx:100804000 709.909