Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03988 ATGGAATCAAACTTGACTCTCAAAGCTGGTCTTGAATTCGATAATTTAGAAGGCGCATGGCAATTTTGGGTGAATTACAAAGGCATAAAAGGCTTTGGAGTTAGAAAACAATATTCAAGCAAGAGTAAGAAAGATGGTTCCGTTACGTCTTACTTATATGTTTGTGTTAAGGAGGGTGTACGGAAACCAGACTCAAGGGATTATAAAACGACCAATCCAAAACCCGAGACAAGAACCGGGTGTATGGCAAGAATGAAAGTCAAACGATTCAATAAAAAATACAGAGTGATCAATTTTATTGATGATCACAATCACCCACTTCAACCACCAAAAACAGTGCATATGTTAGCTTCTCAACGAAGAATAATTGAACATCAAGCATATGAACTTGAAGTGGCAGAAGATGCAGGGATTCAACAAAAAGCCTCGTTTGATTTGATGAGTAAATATGTAGGAGGTAGAGAGAATCTGGGGTATACTAGACAAGATTCAAAGAATTATTTGAATTCTAGGAGGCAGCGAGATATGGCTTATGGTGAAGCCGGGTATTTGCTACAATATTTCCAACAACAATTGATAGATAATCCTTCATTCTTCCATGCATACCAAATATATTTGGAAGAGCAAATAACAAATGTATTTTGGGCTGATGCAAAAATGTTGTTTGACTATCATTGTTTTGGTGATGTCATTTCTTTGGATACCACATATTGTACAAATGGAGATCATTGA 732 0.3634 MESNLTLKAGLEFDNLEGAWQFWVNYKGIKGFGVRKQYSSKSKKDGSVTSYLYVCVKEGVRKPDSRDYKTTNPKPETRTGCMARMKVKRFNKKYRVINFIDDHNHPLQPPKTVHMLASQRRIIEHQAYELEVAEDAGIQQKASFDLMSKYVGGRENLGYTRQDSKNYLNSRRQRDMAYGEAGYLLQYFQQQLIDNPSFFHAYQIYLEEQITNVFWADAKMLFDYHCFGDVISLDTTYCTNGDH. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03988 243 PANTHER OS01G0519700 PROTEIN 6 234 - -
Seca4g03988 243 Pfam FAR1 DNA-binding domain 21 109 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03988 Seca-Chr4 71003466 71004197 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03988 FAR1 8.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03988 - - vun:114184605 406.371