Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03986 ATGGAACCATTTCCAAGAGACCCTCGCGGTTCGCTCGAAGTGTTCAACCCTTCCTCTTCTTACTCCACAGAGAAACCAATCAACTCGCCGTTACGCTCCCAACCGTCGTGGAAAAATTGGATAGACCCACGCGCCAATGACACTGCACAACCACGCGATTCCAATTCCGATGAAGTTACCGCCGGCGACGGCGCTACCTCCTGGATGGCGATCAAGGACCCTACTCCTCCGCCTGCACCGACGCTCGCCGCCGTCCTCGGCGAGGCACTGCCTGCGACCGGCGAATTAGGCTCCGCGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTGAAAACTGACACGGAAACCGGGAAGCCGCAGGGAGTAGCGGTTCGGAAATCCGGCGGCGGTTCGAGGAGGGACTCGAACAACTCCGTGAGGAGCTCCGGCGAATCCTCCGACGACGGTAGGGAACCCCGGGGAATACCGAGGGTTTCGGAGGATTTGAGAGACGCTTTGTCAACGTTTCAACAAACTTTCGTAGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTCTTTAAGATGACGGGTTATACATCCAAAGAGGTCATAGGGAGGAACTGTCGATTTTTACAGGGAGCGGAAACGGATCCAGATGACGTGGCAAAGATAAGAGAAGCGTTACAAGGGGGAACGTCTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGGACACCCTTTTGGAATCTTCTCACTATTGCGCCTATCAAGGACGACCATGGCAAAGTCCTTAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGACCATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAAGCAAGCTATTCAGTATCAGAGTTGGTGCAGGCGGTGAGGCGGCCACGGGCACTCAGTGAATCAGGTGGGCGTCCCTTGATAAAAAAGCCATCACGTGGTTACAATGCTGCTGCACAAGAGAAAACAGAGAAACCATCAAGGAGAAAATCCGAAAGTGTGGCTTCATTTAGACGAAAATCACATGCAGGAGACATAACTTCAATGGAGCGTATCTCTGAGCTCCCTGAAAAGAAAAACAAGAACCCACGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTATGAAACCTTCAATGATGAAGAATTTGTTATTGAGGACAGCTCTGAGGCTAGTGAGGATGATGAGAGGCCTGATAGTATTGATGACAAAGTACAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCGAGGCTTCCTGACAATCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACTGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAAGCTATTGACAATCAAACAGATGTTACTGTACAGCTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAACCAATGCGTGATCAGAAGGGAGAGGTCCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGAAGATACTGCAAAGGAGGGAGAACAATTGGTAAAGCAAACTGCAGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATCTATGGATAAATCATACAAAAGTGGTTCACCCCAAACCTCATAGGAAAGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAACAGATAGGCTTGAAGCATTTTAGGCCAATTAAACCCTTGGGATCGGGAGATACTGGAAGTGTCCATTTGGTGGAGCTATGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACGGAGAGAGAAATCCTTGACATGTTGGATCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTGTCCTGGAGGAGAACTGTTCCTGCTTCTTGACCGACAGCCAACAAAGGTTCTCAAGGAAGATGCAGTGAGAGTTTATGCCGCTGAAGTAATTGTTGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGGGATTTGAAACCAGAAAATGTGTTACTCCAGAGCAGTGGACATGTGTCTCTCACAGATTTTGATTTGTCATGCTTAACATCTTGCAAACCACAGCTTCTAATTCCAGCTACAAATGAAAAGAAGAAACAGCACAAATATCAACAGGCTCCAATATTTATGGCTGAACCTATGAGAGCATCGAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGTTATACACCATTCAGGGGAAAGACTAGGCAAAAAACATTTACAAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGGTGAGAGATTCTTCTCCAGCACCACCTAGTGTTCACACTAGTTGCTTGCAGGTAACTCTCAGTGCAAAACAGTTAATATACCGCTTGTTGCAGAGAGACCCCAATTGCAGATTGGGTTCAAAGGGAGGAGCAAATGAAATTAAGCATCATCCCTTCTTCCGGGGTGTCAACTGGGCCCTAGTTCGCTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTCCGAGACAACTGAAGAAGAAAAGGAAGCTAAATATGTTGATCCTGGGCAAGAGGATATGAATGTCTTCTGA 2970 0.4603 MEPFPRDPRGSLEVFNPSSSYSTEKPINSPLRSQPSWKNWIDPRANDTAQPRDSNSDEVTAGDGATSWMAIKDPTPPPAPTLAAVLGEALPATGELGSAAAQRAAEWGLVLKTDTETGKPQGVAVRKSGGGSRRDSNNSVRSSGESSDDGREPRGIPRVSEDLRDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVAKIREALQGGTSYCGRLLNYKKDGTPFWNLLTIAPIKDDHGKVLKFIGMQVEVSKHTEGSKETMLRPNGLPESLIRYDARQKEKASYSVSELVQAVRRPRALSESGGRPLIKKPSRGYNAAAQEKTEKPSRRKSESVASFRRKSHAGDITSMERISELPEKKNKNPRRRSFMGFIRKSQSNYETFNDEEFVIEDSSEASEDDERPDSIDDKVQKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAEDTAKEGEQLVKQTAENVDDALRELPDANLKPEDLWINHTKVVHPKPHRKDEAAWKAIQKILESGEQIGLKHFRPIKPLGSGDTGSVHLVELCGTGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRVYAAEVIVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLIPATNEKKKQHKYQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQKTFTNILHKDLKFPKSKQVRDSSPAPPSVHTSCLQVTLSAKQLIYRLLQRDPNCRLGSKGGANEIKHHPFFRGVNWALVRCTKPPELDAPLSETTEEEKEAKYVDPGQEDMNVF. 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03986 989 MobiDBLite consensus disorder prediction 112 157 - -
Seca4g03986 989 NCBIfam PAS domain S-box protein 185 279 IPR000014 -
Seca4g03986 989 NCBIfam PAS domain S-box protein 466 556 IPR000014 -
Seca4g03986 989 CDD STKc_phototropin_like 640 967 - -
Seca4g03986 989 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Seca4g03986 989 MobiDBLite consensus disorder prediction 320 393 - -
Seca4g03986 989 SUPERFAMILY Protein kinase-like (PK-like) 626 966 IPR011009 -
Seca4g03986 989 CDD PAS 456 556 IPR000014 -
Seca4g03986 989 FunFam Putative LOV domain-containing protein 173 329 - -
Seca4g03986 989 Pfam Protein kinase domain 644 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03986 989 FunFam LOV domain-containing protein 430 594 - -
Seca4g03986 989 ProSiteProfiles PAS repeat profile. 441 514 IPR000014 -
Seca4g03986 989 MobiDBLite consensus disorder prediction 965 981 - -
Seca4g03986 989 SMART serkin_6 642 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03986 989 Gene3D PAS domain 173 327 - -
Seca4g03986 989 SUPERFAMILY PYP-like sensor domain (PAS domain) 180 272 IPR035965 -
Seca4g03986 989 ProSiteProfiles PAC domain profile. 515 569 IPR000700 -
Seca4g03986 989 MobiDBLite consensus disorder prediction 347 389 - -
Seca4g03986 989 CDD PAS 186 275 IPR000014 -
Seca4g03986 989 Gene3D Phosphorylase Kinase; domain 1 641 978 - -
Seca4g03986 989 FunFam LOV domain-containing protein 641 725 - -
Seca4g03986 989 PANTHER FLIPPASE KINASE 1-RELATED 145 969 - -
Seca4g03986 989 SUPERFAMILY PYP-like sensor domain (PAS domain) 457 556 IPR035965 -
Seca4g03986 989 ProSiteProfiles PAC domain profile. 233 287 IPR000700 -
Seca4g03986 989 Gene3D Transferase(Phosphotransferase) domain 1 726 969 - -
Seca4g03986 989 MobiDBLite consensus disorder prediction 416 435 - -
Seca4g03986 989 ProSiteProfiles PAS repeat profile. 159 230 IPR000014 -
Seca4g03986 989 Gene3D PAS domain 429 594 - -
Seca4g03986 989 SMART pac_2 236 278 IPR001610 -
Seca4g03986 989 SMART pac_2 518 560 IPR001610 -
Seca4g03986 989 Pfam PAS domain 180 276 IPR000014 -
Seca4g03986 989 Pfam PAS domain 464 556 IPR000014 -
Seca4g03986 989 MobiDBLite consensus disorder prediction 13 62 - -
Seca4g03986 989 FunFam Putative LOV domain-containing protein 726 899 - -
Seca4g03986 989 MobiDBLite consensus disorder prediction 962 989 - -
Seca4g03986 989 Coils Coil 573 593 - -
Seca4g03986 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Seca4g03986 989 ProSiteProfiles Protein kinase domain profile. 642 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03986 989 SMART pas_2 161 230 IPR000014 -
Seca4g03986 989 SMART pas_2 443 512 IPR000014 -
Seca4g03986 989 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03986 Seca-Chr4 70935184 70950538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03986 4 989 AGC Kinase Gene Family AT3G45780 69.118 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g03986 Pkinase 6.5e-62 CL0016