Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03971 ATGGACACACACTGCAACACCGCATTCTCACCCGCCGGCCACTTTGTGTCGCCGCAGGATGCATCGACGGTGTCGCCAATGCACTACTCCACCACTCCTCAGCTGCACTACGAGTCGCTCTCGCAACTCAACTTGGAGGTGAGTTCCAATGCCAATAATAGCTGTAGCAGCGGGTGCACCAGCTACGTTGGGTCACCGAGTTCGCTGGCGAGTTATGAGACTCAACGAGCCTGCTTGATGCAGAGGAGCGTTAGCAGCCACTCGCTGCTGAAGAATAATGGGGTCCACTACAACCCCTTTTCTCCTCTGTTTGCTGAGTTATTGGACTCAGGGGACGGTCCGGTGCGGAGAGTTTACAGTACCGGTGATCTGCAGAGAATTAATGGAATGCAACATTTTCATCAGTCAGATAGTCCATTGTCAACTGAGAGCAGTATGATACTAGAAGGAATGGCCAGAACCAGTCCTTACAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGAAGCAAGAGAAACCAGAGGAACTTCACCAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGTATCAGAGGACGATTTGCTAGGAATGATGAAATTGCAATGAACCCTCCTGTTGAGTGGAGCAATAATAGTACTGGAGAGGAAGAAGACGAGGAAGAGGAAAATTGGGTCAATTTCTTTGATTCCTTGGTTCCTGCAAATAATCTTCCTCAGGACCCTCAAGGCAGTACTTCTTCCTTTGGTGTGTTCTCTTAA 780 0.4897 MDTHCNTAFSPAGHFVSPQDASTVSPMHYSTTPQLHYESLSQLNLEVSSNANNSCSSGCTSYVGSPSSLASYETQRACLMQRSVSSHSLLKNNGVHYNPFSPLFAELLDSGDGPVRRVYSTGDLQRINGMQHFHQSDSPLSTESSMILEGMARTSPYSPEEKKVRIERYRSKRNQRNFTKKIKYACRKTLADSRPRIRGRFARNDEIAMNPPVEWSNNSTGEEEDEEEENWVNFFDSLVPANNLPQDPQGSTSSFGVFS. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03971 259 Pfam CCT motif 164 204 IPR010402 GO:0005515
Seca4g03971 259 MobiDBLite consensus disorder prediction 236 259 - -
Seca4g03971 259 ProSiteProfiles CCT domain profile. 162 204 IPR010402 GO:0005515
Seca4g03971 259 MobiDBLite consensus disorder prediction 208 259 - -
Seca4g03971 259 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 223 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03971 Seca-Chr4 70181885 70184466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03971 150 203 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 9.33e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g03971 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03971 - - aprc:113859774 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03971 4 70181885 70184466 Seca4g03971 4 70181885 70184466 ECH
Seca4g03971 4 70181885 70184466 Seca4g09126 4 216621755 216624478 PCT