Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03958 ATGGCAAAACCAAAAACCATTATCAACATCTCTAGTAACTCGGACACTGAGAATGAGCGTGAAACTAACCCTAACTCCTGGGTAGCAACCATGACAAAGGCAAAGTCTTCCGGCAAGCAGACTCTGTGTGTCCCTAAGAGAATCAGAGATACATTGTTTGGACATGAGCCGGATTACATGTTCATAAAATATCAGGACGAACCACAGGAATACTGGGAGTTGAAATGGCACAACGACCCACGTGTGCGCCTCATAGGACACGGATGGTACGAGTTTTGCAAATACCATAACCTCAAAACAAACGACCAGATTACTTTCACAAAAACGAGCAATTCTTACGTTGTTATTGTCACTATCCAGAGAAAGCGTTCTTATTTTGCTTCCCCTTTTAGTAACATGCTTTGTTCTACATGTCCTGATGCTATGTACTTGGCTCCCTGCAACTGCTAG 450 0.4311 MAKPKTIINISSNSDTENERETNPNSWVATMTKAKSSGKQTLCVPKRIRDTLFGHEPDYMFIKYQDEPQEYWELKWHNDPRVRLIGHGWYEFCKYHNLKTNDQITFTKTSNSYVVIVTIQRKRSYFASPFSNMLCSTCPDAMYLAPCNC. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03958 149 SUPERFAMILY DNA-binding pseudobarrel domain 22 120 IPR015300 -
Seca4g03958 149 Pfam B3 DNA binding domain 28 115 IPR003340 GO:0003677
Seca4g03958 149 ProSiteProfiles B3 DNA-binding domain profile. 27 123 IPR003340 GO:0003677
Seca4g03958 149 CDD B3_DNA 28 119 IPR003340 GO:0003677
Seca4g03958 149 SMART B3_2 27 123 IPR003340 GO:0003677
Seca4g03958 149 Gene3D - 9 126 IPR015300 -
Seca4g03958 149 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03958 Seca-Chr4 70030806 70031842 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03958 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03958 - K04976 lja:Lj6g3v0497350.1 62.003