Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03943 ATGATTTCGCAACCCCTCTTATTAGCTTCCATTCTCTTCCTCTCTGTTTTCCTTCTCCAACTCCTCTTCTATAAGAGAAGCAACAAAACAAAGCATCAATTATTGCACCCTCCAAGCCCACCTGCAATATCCATAATTGGCCATCTCCATTTGCTTAAACCCATCATCCATCAAGCCTTCCGAGACCTTACCCACCAATATGGCCCTCTTCTTTCCCTTCGAATTGGCTCTGTTCAATTCATTGTTGCCAGCACCCCATCACTCGCTAAAGAGTTTCTTAAGACAAATGAGCTCACATATTCTTCTCGTAAAAAGAACATGGCCATTAACATGGTTACCTACGAAAATGCCACTTTTGCTTTTGCCCCTTATGACACATATTGGAAATTCATCAAAAAGCTTAGCACCATTGACCTCTTAGGCAACCGAACCCTTGGACACTTCCTTCCAATTCGGACCCAGGCAGTCCATGAATTTATTCATACTTTAGTGGTTAAATCAAAGGCCAAAGAGAGTGTGAACCTCTCTCAAGAATTGTTGAAGCTTTCTAACAACATAATATCACAGATGATGTTGAGCATCAAGAGCTCTGGAACAGACAGCCAAGCAGAACAGGCAAGGGCTCTGGTTCGTGAGGTGACGCAGATTTTTGGGGAATTTAATGTATCAGATTTCATTGGATTTTTCAAAAACATGGATTTGCAAGGTTTCAAAAAGAGGGCCATGGACATACACCAGAGGTATGATGCTTTGTTGGAGAAGGTCATCTCTGATCGCGAGGAATCAAGAAGGAAACCAAAAGTAGATGCTTGTGAAGATGGAGAAGAGAAAGTGAAGGATTTTCTTGACATTTTGCTTGATGTCTCCGAGGAGAAAGATTGTGAGGTCAAGTTAACAAGGAATCATATTAAATCATTGATCTTGGATTACTTTACAGCAGCCACTGACACAACGGCCATCTCAGTGGAATGGGTAATAGCAGAACTGTTCAACAATCCAAAAGTGATGAAGAAAGCTCAAGAGGAGATAGATAGAGTTATTGGGAATGAACGATTAGTGTGTGAAGCAGACAGTTCAAACCTTCCTTATATCCATACCATCATAAAAGAAACAATGAGGCTTCATCCCCCAATACCAATGATTATGAGGAAGGGAATACAAGATTGTGAGGTTAATGGATACATGATTCCAAAAGACTCAATAATATGCATAAACATTTGGGCCATGGGAAGGGACCCAGAGATTTGGAAAAGCCCATTAGAGTTTAATCCAGAGAGGTTTATAGAAGGAGAAGGGGGTGCTATAGATATCAAAGGTCATAACTTTGAGCTATTGCCATTTGGTTCTGGAAGGAGAGGTTGCCCTGGCATGCCTTTGGCCATGCGAGAATTACCCACTATAATTGGAGCATTGATACAATGCTTTGAGTGGAAGATGCTCAATTCTGAAGGTAAAATCTTAGACCATGGCAAGACAATTGATATGGATGAACGACCGGGATTGACTGCTCCTAGGGCAAATGATCTTGTTTGTATTCCAATTGCACGATTGAATCCCACTCCTTTTCTTCAAGTGTAG 1578 0.4125 MISQPLLLASILFLSVFLLQLLFYKRSNKTKHQLLHPPSPPAISIIGHLHLLKPIIHQAFRDLTHQYGPLLSLRIGSVQFIVASTPSLAKEFLKTNELTYSSRKKNMAINMVTYENATFAFAPYDTYWKFIKKLSTIDLLGNRTLGHFLPIRTQAVHEFIHTLVVKSKAKESVNLSQELLKLSNNIISQMMLSIKSSGTDSQAEQARALVREVTQIFGEFNVSDFIGFFKNMDLQGFKKRAMDIHQRYDALLEKVISDREESRRKPKVDACEDGEEKVKDFLDILLDVSEEKDCEVKLTRNHIKSLILDYFTAATDTTAISVEWVIAELFNNPKVMKKAQEEIDRVIGNERLVCEADSSNLPYIHTIIKETMRLHPPIPMIMRKGIQDCEVNGYMIPKDSIICINIWAMGRDPEIWKSPLEFNPERFIEGEGGAIDIKGHNFELLPFGSGRRGCPGMPLAMRELPTIIGALIQCFEWKMLNSEGKILDHGKTIDMDERPGLTAPRANDLVCIPIARLNPTPFLQV. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03943 525 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PANTHER STEROID 21-HYDROXYLASE-RELATED 15 510 - -
Seca4g03943 525 CDD CYP93 68 513 - -
Seca4g03943 525 FunFam Cytochrome P450 family protein 28 511 - -
Seca4g03943 525 Gene3D Cytochrome P450 22 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Seca4g03943 525 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 SUPERFAMILY Cytochrome P450 37 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g03943 525 Pfam Cytochrome P450 37 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03943 Seca-Chr4 69612713 69614865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03943 10 516 Cytochrome P450 AT5G06900 40.275 3.20e-144 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03943 K23179 K24188 gmx:100783503 858.211