Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03936 ATGAAACATGTCAAAACAGAACTTTTCAATCTGCTGGAGATTGCTTACCAAGAGAGGGATGAAGCAAGGTGTCAGGTTAAGAAACTAATGAACAAGCTTGCAACCTCTAGTCCAATCCATTTGCAAAACATGTTTGGTGGAGTCCAGCATGAAAGCCTTTTCATGTTTCCTTCTGCTAAAGCAAACCCAAGTATCACAGAATCTAATAGTCTCTCACATGGTTCCTCACCTGTAGATTCCTTTTTTGATACTGTTTCTTCTCCAGAGTTTTCAAACTCCAATAACAACATGATTTATCTCAATCAGCATTTGGTTCAAGACTTCAATTGCTCAGCAAATCCTGCTTTGTTGCCAAGTACTGATCATGCAACTGCAGTTATAGATAGTCTTGCCAAAAAAAGAGTGTTGCCTCAAAAGGGGAAGCTTCTTCAGGCTATGATAGATGCTGGTCCTTTGCTTCAGACAATCCTCCTTGCAGGGCCACTTCCTACATGGAGAAATCCCCCTCCTTTGCAAGACATCAAAGTTCCACCTTTGACCATCAAAGAGTATGATACCACTAGTATTGAACCTAGTTCCTTTGCAGATACAGGGAATTCATTTCTAAAACCAAAGCTTCCATCTTCAAATGCTCTCTCCACTTGTTCAGCTTCTATGCTTAACTTTGCTGGTCATTCCCCTGGCTCATTGAACAATTCATGGCAATTAACTTCAAGTTCTAGTGTTGGGATTCAAAGCAAACTCTGTAACTTCAATTTTATTATAATGTCTTATGATTCTGGGCAATCTGGTTCACCTTCTCAATGGAAAATAGGAGAGGTTTTTACAATTATTATTGTGTGGTCCATCTTCTTTATATTCATTTACTATGGCCTATTTAAGCGTCTCTTCTTAATAATCTACCGTGCAATCACCACTAGAAACCGGGTTCAAAGGAGGCTTCTAGAAGAGTCCAATTCAAATCCAAGGGATCCTTCTATGCAGCTTGAAAGCTGTGGATTGGACTTATCTGTGGTACACACTCTTCCCATGTCACAGTTTAAGAAAAATGAGGGTGAACAAAAGGGGAGTAACGCGGATTGTGCCATTTGTCTTGGAGAGTTTGAAGAAGGGGAATGGCTAAAACATCTTCCATATTGTACACATGTCTTTCATGGTTCTTGCATTGACACATGGTTTCAGTCTCATTCAAATTGTCCCCTCTGCAGATCTTATGTACTTCATGACTACTTCCCTGACAACATAGATCATGTGCCAAGCTCTGAAAACAATTTCCATTAG 1281 0.3989 MKHVKTELFNLLEIAYQERDEARCQVKKLMNKLATSSPIHLQNMFGGVQHESLFMFPSAKANPSITESNSLSHGSSPVDSFFDTVSSPEFSNSNNNMIYLNQHLVQDFNCSANPALLPSTDHATAVIDSLAKKRVLPQKGKLLQAMIDAGPLLQTILLAGPLPTWRNPPPLQDIKVPPLTIKEYDTTSIEPSSFADTGNSFLKPKLPSSNALSTCSASMLNFAGHSPGSLNNSWQLTSSSSVGIQSKLCNFNFIIMSYDSGQSGSPSQWKIGEVFTIIIVWSIFFIFIYYGLFKRLFLIIYRAITTRNRVQRRLLEESNSNPRDPSMQLESCGLDLSVVHTLPMSQFKKNEGEQKGSNADCAICLGEFEEGEWLKHLPYCTHVFHGSCIDTWFQSHSNCPLCRSYVLHDYFPDNIDHVPSSENNFH. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03936 426 FunFam E3 ubiquitin-protein ligase ATL6 323 409 - -
Seca4g03936 426 Pfam Ring finger domain 360 403 IPR001841 -
Seca4g03936 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 407 IPR013083 -
Seca4g03936 426 SMART ring_2 361 402 IPR001841 -
Seca4g03936 426 Pfam Protein of unknown function (DUF1635) 7 201 IPR012862 -
Seca4g03936 426 CDD RING-H2_EL5-like 360 403 - -
Seca4g03936 426 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 6 216 IPR012862 -
Seca4g03936 426 ProSiteProfiles Zinc finger RING-type profile. 361 403 IPR001841 -
Seca4g03936 426 SUPERFAMILY RING/U-box 353 409 - -
Seca4g03936 426 Coils Coil 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03936 Seca-Chr4 69480888 69482676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03936 328 422 C3H Transcription Factor Family AT5G10380 45.455 3.06e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03936 - - lja:Lj3g3v3154070.1 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03936 4 69480888 69482676 Seca4g03936 4 69480888 69482676 ECH
Seca4g03936 4 69480888 69482676 Seca4g09105 4 216091605 216093322 PCT