Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03930 ATGATTCAACAGGAAATCAGAAAAGGTCCCTGGACAGAACAGGAGGACTTCAAATTGGTGTATTTTGTTGGGCTATTTGGAGATCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAAGGTGGCGGGAGACAGTTTGAGTAGAACAGGTAAAAGTTGCAGGTTACGTTGGGTTAATTACCTGCATCCTGATCTCAAACGAGGGAAGATGACACCTCAAGAAGAGCGCCTTGTCATCGAGCTTCACTCCAAATGGGGAAATAGGTTTGACTTGATTGAGTTTCACAACAAAAAAAAGTTACACCTATATATATGGTCACGAATTGCTCGCAAATTGCCCGGGCGAACAGATAATGAGATTAAGAATTACTGGAGGACTCACATGAGGAAAAAGAAGGCCATGGAGAAAAAGCGTGCTGCTGCTGCTGCAGCAGCAGCAACATCACCTTCATCTTCTAGCTGTCAATCCTCACAATCATCAAATAATCAAGCTGTTGATTCCAAAGAATCTAGCGAAGAAAGCTCTTATGACACAGGTGGACCTGATAACAAGATGACAAGCTCAACAGGAATTCATATTGTTGGGGAAGATGGAGAACAGGGGTACTCTATGGATGATATATGGAAAGATATTGCTATGTCAATAGATAATAACAACATGATCAATCTGCAACCACCAGTCAGTGAAGAAGGTTGCAACTTCTCTTGTCCTCCTCTTCTTCCATCATGGGATTATTATAATTATTCTTCAGATCAACTATGGGTGATGGATGAATTAGAAGAAAGCAAGATGTTATTCCCTGTAGGTGATCAATATTTTTCATGCTATGGTGAAGGAAGCGCATTTTTAACCGGTTAA 861 0.4088 MIQQEIRKGPWTEQEDFKLVYFVGLFGDRRWDFIAKVSGLKVAGDSLSRTGKSCRLRWVNYLHPDLKRGKMTPQEERLVIELHSKWGNRFDLIEFHNKKKLHLYIWSRIARKLPGRTDNEIKNYWRTHMRKKKAMEKKRAAAAAAAATSPSSSSCQSSQSSNNQAVDSKESSEESSYDTGGPDNKMTSSTGIHIVGEDGEQGYSMDDIWKDIAMSIDNNNMINLQPPVSEEGCNFSCPPLLPSWDYYNYSSDQLWVMDELEESKMLFPVGDQYFSCYGEGSAFLTG. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03930 286 Pfam Myb-like DNA-binding domain 68 128 IPR001005 -
Seca4g03930 286 Pfam Myb-like DNA-binding domain 8 62 IPR001005 -
Seca4g03930 286 SMART sant 7 64 IPR001005 -
Seca4g03930 286 SMART sant 67 131 IPR001005 -
Seca4g03930 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 133 IPR017930 -
Seca4g03930 286 Gene3D - 71 132 - -
Seca4g03930 286 MobiDBLite consensus disorder prediction 177 191 - -
Seca4g03930 286 CDD SANT 10 62 IPR001005 -
Seca4g03930 286 MobiDBLite consensus disorder prediction 146 170 - -
Seca4g03930 286 MobiDBLite consensus disorder prediction 135 199 - -
Seca4g03930 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 66 IPR017930 -
Seca4g03930 286 SUPERFAMILY Homeodomain-like 5 125 IPR009057 -
Seca4g03930 286 ProSiteProfiles Myb-like domain profile. 63 129 IPR001005 -
Seca4g03930 286 ProSiteProfiles Myb-like domain profile. 3 62 IPR001005 -
Seca4g03930 286 Gene3D - 8 67 - -
Seca4g03930 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 185 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca4g03930 286 CDD SANT 70 128 IPR001005 -
Seca4g03930 286 FunFam Myb transcription factor 8 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03930 Seca-Chr4 69370137 69371643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03930 1 284 MYB Transcription Factor Family AT5G59780 50.345 2.50e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g03930 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03930 K09422 - gmx:100776886 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09101 4 216038238 216040035 Seca4g03930 4 69370137 69371643 PCT