Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03924 ATGAAGAGATGCAAAGTCGACGATGAGGGTGAGGTAGATGAAACGGCTAATTGTTTGATGTTACTGTCCAAAATTGGTGACCCATCCAGAGAGAGAGTTTTGAAGGGTGGGACTGGGGGTGGGGGATTTAGGTGCAAGACTTGTAACAGACAGTTCCTTTCTTTTCAAGCCCTTGGGGGCCACAGGGCTAGCCACAAGAAGCTAAAGCTCATGGATACAGACCTTGCTTCCTGCCTGCAGTTATTACCAACCAAGAAACTAAAGATGCACATGTGCCCTGTTTGTGGGCTTGAGTTTGAGATTGGACAAGCGCTAGGAGGACACATGAGGAAGCATAGAGCTGCGGTGCCCACCATATCTAATGTAGCTACTAAAAAGTTTCAAGACTTGTGCTTGGATTTGAACTTGACACCCTACGAGAATGATATGAACCTCAACTTAAGGACACACCTGTATTAA 459 0.4597 MKRCKVDDEGEVDETANCLMLLSKIGDPSRERVLKGGTGGGGFRCKTCNRQFLSFQALGGHRASHKKLKLMDTDLASCLQLLPTKKLKMHMCPVCGLEFEIGQALGGHMRKHRAAVPTISNVATKKFQDLCLDLNLTPYENDMNLNLRTHLY. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03924 152 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca4g03924 152 Gene3D Classic Zinc Finger 41 112 - -
Seca4g03924 152 SUPERFAMILY beta-beta-alpha zinc fingers 43 112 IPR036236 -
Seca4g03924 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Seca4g03924 152 Pfam C2H2-type zinc finger 90 114 - -
Seca4g03924 152 Pfam C2H2-type zinc finger 43 67 - -
Seca4g03924 152 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Seca4g03924 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Seca4g03924 152 PANTHER ZINC FINGER PROTEIN ZAT5 11 141 - -
Seca4g03924 152 SMART c2h2final6 90 112 IPR013087 -
Seca4g03924 152 SMART c2h2final6 43 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03924 Seca-Chr4 69265404 69265862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03924 7 127 C2H2 Transcription Factor Family AT3G46080 48.438 4.84e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g03924 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03924 - - gmx:112998408 166.007