Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g03924 | ATGAAGAGATGCAAAGTCGACGATGAGGGTGAGGTAGATGAAACGGCTAATTGTTTGATGTTACTGTCCAAAATTGGTGACCCATCCAGAGAGAGAGTTTTGAAGGGTGGGACTGGGGGTGGGGGATTTAGGTGCAAGACTTGTAACAGACAGTTCCTTTCTTTTCAAGCCCTTGGGGGCCACAGGGCTAGCCACAAGAAGCTAAAGCTCATGGATACAGACCTTGCTTCCTGCCTGCAGTTATTACCAACCAAGAAACTAAAGATGCACATGTGCCCTGTTTGTGGGCTTGAGTTTGAGATTGGACAAGCGCTAGGAGGACACATGAGGAAGCATAGAGCTGCGGTGCCCACCATATCTAATGTAGCTACTAAAAAGTTTCAAGACTTGTGCTTGGATTTGAACTTGACACCCTACGAGAATGATATGAACCTCAACTTAAGGACACACCTGTATTAA | 459 | 0.4597 | MKRCKVDDEGEVDETANCLMLLSKIGDPSRERVLKGGTGGGGFRCKTCNRQFLSFQALGGHRASHKKLKLMDTDLASCLQLLPTKKLKMHMCPVCGLEFEIGQALGGHMRKHRAAVPTISNVATKKFQDLCLDLNLTPYENDMNLNLRTHLY. | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g03924 | 152 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 92 | 112 | IPR013087 | - | |
Seca4g03924 | 152 | Gene3D | Classic Zinc Finger | 41 | 112 | - | - | |
Seca4g03924 | 152 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 112 | IPR036236 | - | |
Seca4g03924 | 152 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 43 | 70 | IPR013087 | - | |
Seca4g03924 | 152 | Pfam | C2H2-type zinc finger | 90 | 114 | - | - | |
Seca4g03924 | 152 | Pfam | C2H2-type zinc finger | 43 | 67 | - | - | |
Seca4g03924 | 152 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 45 | 65 | IPR013087 | - | |
Seca4g03924 | 152 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 90 | 117 | IPR013087 | - | |
Seca4g03924 | 152 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 11 | 141 | - | - | |
Seca4g03924 | 152 | SMART | c2h2final6 | 90 | 112 | IPR013087 | - | |
Seca4g03924 | 152 | SMART | c2h2final6 | 43 | 65 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g03924 | Seca-Chr4 | 69265404 | 69265862 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g03924 | 7 | 127 | C2H2 Transcription Factor Family | AT3G46080 | 48.438 | 4.84e-32 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca4g03924 | zf-C2H2_6 | 1.7e-08 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g03924 | - | - | gmx:112998408 | 166.007 |