Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03913 ATGGCACCTAAGGTAGAGAAGAAGCTCACAGAGAAGAAGAAGTCCGCGGTGGGGCGAAGGCCCGTAAACAGAGAAGAAGCCAAATGCAAGCAAGAAGTTTCCAAAGGAGGGTCTACATTATTGCAGGCTTTGTGGTTACGCTGTCACTGCATATTTTATCTTCTTTTCTTTCTCTCTCTCGATCTCGAAGCCCTAACTTCCCCGTTCACTCTCAGAACCTTCCCCTTGCTTGATCTCACTCTCTGCGTTGAACGTAAGGTAAAAGCTCAACAAATAAACATGTCTGCAGCTCTGGATATGACCCTCGACGACATCATCAAGAACAACAAAAAGTCTGCATCCGGAAACTCCAGGGGCCGCGCCCGAGGCTCCGGACCAGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGCTACACCCTACGCCGCCGCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTATGCAGATCAGCATGTGGCTGCGGCGGTGTACCCAGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACCGGGACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCATGGTGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCACGACGAGTTGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCGATGAAGATAGAGATTGTGGGAACAAATATCTCTACACCTGGAGTGGCTCCTGCTGCAAATGTAGCTATTGGAAACTCAAATGGAGTTCCTCAAATTAGACAAGGAAGAGGTGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAAGGGATAGAGGACGGGGAAGAGGTCGTGGTGGAGGTCGTGGCGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAATTGAACTGA 1020 0.498 MAPKVEKKLTEKKKSAVGRRPVNREEAKCKQEVSKGGSTLLQALWLRCHCIFYLLFFLSLDLEALTSPFTLRTFPLLDLTLCVERKVKAQQINMSAALDMTLDDIIKNNKKSASGNSRGRARGSGPGPARRFSNRAANRATPYAAAKAPETTWQHDMYADQHVAAAVYPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAANVAIGNSNGVPQIRQGRGGALRRPGGRGQGIRRDRGRGRGRGGGRGEKVSAEDLDADLEKYHSEAMQLN. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03913 339 MobiDBLite consensus disorder prediction 297 332 - -
Seca4g03913 339 SUPERFAMILY RNA-binding domain, RBD 134 256 IPR035979 GO:0003676
Seca4g03913 339 MobiDBLite consensus disorder prediction 109 145 - -
Seca4g03913 339 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g03913 339 Gene3D - 164 322 IPR012677 -
Seca4g03913 339 MobiDBLite consensus disorder prediction 278 339 - -
Seca4g03913 339 FunFam THO complex subunit 4 175 321 - -
Seca4g03913 339 CDD RRM_THOC4 182 256 - -
Seca4g03913 339 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 98 337 - -
Seca4g03913 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Seca4g03913 339 SMART FoP_duplication_2 270 339 IPR025715 -
Seca4g03913 339 SMART rrm1_1 183 255 IPR000504 GO:0003723
Seca4g03913 339 Pfam C-terminal duplication domain of Friend of PRMT1 283 334 IPR025715 -
Seca4g03913 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 252 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03913 Seca-Chr4 68949165 68953887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03913 181 256 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 4.04e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03913 K12881 - gmx:100775827 335.88