Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g03913 | ATGGCACCTAAGGTAGAGAAGAAGCTCACAGAGAAGAAGAAGTCCGCGGTGGGGCGAAGGCCCGTAAACAGAGAAGAAGCCAAATGCAAGCAAGAAGTTTCCAAAGGAGGGTCTACATTATTGCAGGCTTTGTGGTTACGCTGTCACTGCATATTTTATCTTCTTTTCTTTCTCTCTCTCGATCTCGAAGCCCTAACTTCCCCGTTCACTCTCAGAACCTTCCCCTTGCTTGATCTCACTCTCTGCGTTGAACGTAAGGTAAAAGCTCAACAAATAAACATGTCTGCAGCTCTGGATATGACCCTCGACGACATCATCAAGAACAACAAAAAGTCTGCATCCGGAAACTCCAGGGGCCGCGCCCGAGGCTCCGGACCAGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGCTACACCCTACGCCGCCGCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTATGCAGATCAGCATGTGGCTGCGGCGGTGTACCCAGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACCGGGACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCATGGTGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCACGACGAGTTGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCGATGAAGATAGAGATTGTGGGAACAAATATCTCTACACCTGGAGTGGCTCCTGCTGCAAATGTAGCTATTGGAAACTCAAATGGAGTTCCTCAAATTAGACAAGGAAGAGGTGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAAGGGATAGAGGACGGGGAAGAGGTCGTGGTGGAGGTCGTGGCGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAATTGAACTGA | 1020 | 0.498 | MAPKVEKKLTEKKKSAVGRRPVNREEAKCKQEVSKGGSTLLQALWLRCHCIFYLLFFLSLDLEALTSPFTLRTFPLLDLTLCVERKVKAQQINMSAALDMTLDDIIKNNKKSASGNSRGRARGSGPGPARRFSNRAANRATPYAAAKAPETTWQHDMYADQHVAAAVYPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAANVAIGNSNGVPQIRQGRGGALRRPGGRGQGIRRDRGRGRGRGGGRGEKVSAEDLDADLEKYHSEAMQLN. | 340 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g03913 | 339 | MobiDBLite | consensus disorder prediction | 297 | 332 | - | - | |
Seca4g03913 | 339 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 256 | IPR035979 | GO:0003676 | |
Seca4g03913 | 339 | MobiDBLite | consensus disorder prediction | 109 | 145 | - | - | |
Seca4g03913 | 339 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Seca4g03913 | 339 | Gene3D | - | 164 | 322 | IPR012677 | - | |
Seca4g03913 | 339 | MobiDBLite | consensus disorder prediction | 278 | 339 | - | - | |
Seca4g03913 | 339 | FunFam | THO complex subunit 4 | 175 | 321 | - | - | |
Seca4g03913 | 339 | CDD | RRM_THOC4 | 182 | 256 | - | - | |
Seca4g03913 | 339 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 98 | 337 | - | - | |
Seca4g03913 | 339 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 182 | 259 | IPR000504 | GO:0003723 | |
Seca4g03913 | 339 | SMART | FoP_duplication_2 | 270 | 339 | IPR025715 | - | |
Seca4g03913 | 339 | SMART | rrm1_1 | 183 | 255 | IPR000504 | GO:0003723 | |
Seca4g03913 | 339 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 283 | 334 | IPR025715 | - | |
Seca4g03913 | 339 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 184 | 252 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g03913 | Seca-Chr4 | 68949165 | 68953887 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g03913 | 181 | 256 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 35.526 | 4.04e-08 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g03913 | K12881 | - | gmx:100775827 | 335.88 |