Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03911 ATGTCTGCAGCTCTGGATATGACCCTCGACGACATCATCAAGAACAACAAAAAGTCTGCATCCGGAAACTCCAGGGGCCGCGCCCGAGGCTCCGGACCAGGACCCGCTCGCCGCTTCTCCAACCGTGCAGCCAACCGCGCCACACCCTACGCCGCCGCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTATGCAGATCAGCATGTGGCTGCGGCGGCGTACCCAGCTCAAGGTGGTCGTCCGCCTTCCATAGAAACCGGGACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCATGGTCTTCATTATGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCACGACGAGTTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAACTAGATGGGAAGCCAATGAAGATAGAGATTGTGGGAACAAACATTTCTACACCTGGAGTGGCTCCTGCTGGAACTGTAGCTATTGGAAACTCAAATAGAGTTCCTCAAATTAGACAAGGAAGAGGTGGGGCATTACGAAGGCCAGGGGGTAGAGGGCAAGGCGTTCGAAGGGATCGAGGACGGGGAAGAGGTCGTGGTGGAGGTCGTGGCGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAATTGAACTGA 741 0.5142 MSAALDMTLDDIIKNNKKSASGNSRGRARGSGPGPARRFSNRAANRATPYAAAKAPETTWQHDMYADQHVAAAAYPAQGGRPPSIETGTKLYISNLDYGVSNDDIKELFSEVGDMKRHGLHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAGTVAIGNSNRVPQIRQGRGGALRRPGGRGQGVRRDRGRGRGRGGGRGEKVSAEDLDADLEKYHSEAMQLN. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03911 246 Coils Coil 235 246 - -
Seca4g03911 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Seca4g03911 246 MobiDBLite consensus disorder prediction 204 239 - -
Seca4g03911 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Seca4g03911 246 MobiDBLite consensus disorder prediction 14 55 - -
Seca4g03911 246 FunFam THO complex subunit 4 82 228 - -
Seca4g03911 246 Gene3D - 65 229 IPR012677 -
Seca4g03911 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Seca4g03911 246 Pfam C-terminal duplication domain of Friend of PRMT1 188 241 IPR025715 -
Seca4g03911 246 SMART FoP_duplication_2 177 246 IPR025715 -
Seca4g03911 246 SUPERFAMILY RNA-binding domain, RBD 70 169 IPR035979 GO:0003676
Seca4g03911 246 CDD RRM_THOC4 89 163 - -
Seca4g03911 246 MobiDBLite consensus disorder prediction 186 246 - -
Seca4g03911 246 SMART rrm1_1 90 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03911 Seca-Chr4 68929628 68932940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03911 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 2.66e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03911 K12881 - gmx:100775827 328.176