Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03901 ATGAAAGCCACTAGTGATGGTGATGATGCCACTCCAGTTCAGGGGAGTGGAAATATAAAGGTCATGACCAACCATTCTATGTGTCGTTCAGGCCCTCCTTTGACAGCCATAGACAAGTTCTTATGGGGCCAACAAAGTCATACAAATGCAAGTGTTTTTGACAATCGATTCTCAACTTTTGCTTGTTCTGGTGCTTCAACTACATGTAGCTTTCTGTGGCATAATAACACTCAAGAAGCAAGTAACTTCATTGATCAACTCTTAGCAAATGAAGAGTCCCTGAATTGGACACACTACCATATCTCCACATTGTGCCAACAGAAAGAAGATATGCAAGTTTTAGGGAAGAGTAGTGTGAAAATGGGAAGAAGGCCTAAGAAAGGATCTTCTGTGTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGCCTGATATTAAGGTCTAAAGATAATTGGAGTGAAGAAGAAGAGAGGATATTAGTAGAAATGCATGCTAAGATGGGAAATCGTTGGGCACAGATTGCAAAGCGGATTCCAGGAAGAACAGAGAATGCCATAAAAAACCATTGGAATGCCACTAAGAGGAAGCTTAATTCAAAGAGAAAGAACAAAAAGACAGCAAGCTCCAATGGAAAGCCACAATCCTCTATCCTTCAAAACTATATCACTCAAACTAGCTCCACAACAATAATCTCTGACTCTGACCCTGCTGTAACAAAACAATCCCACCTTCAGCTCTCTGATTCTATTACCAATGACAATTTCTCATCACCACTAATAGCTGATCACCCATATGAAGATGATGAGTTACTCTTCATGCAACAACTTTTCAAGGACAATCAGACCCAACGACAACCACTTGTCCCTGATCAAAATGGGTTTATTCATTCCAATGCTAAGCCAAACTCATATAACAATGTGTACTTGGATGAGAGTCTTATTCTTAGAAAGACTCCTCCCACCCCTACCATCAATTCTGATCATGTCTATCTTTCTCACTTGCTGAATGGAACCGCCACTTCATCACTTTGCTATAATTATGGGATTCAGTACCAGAACATGGACTTGCAATTGGAGGATCAAAATTCTTCAGATGGAAAGAAAGAGATGGATTTGATAGAGTTGGTTTATTCTGCTCAATTTTTCCACTAG 1155 0.3991 MKATSDGDDATPVQGSGNIKVMTNHSMCRSGPPLTAIDKFLWGQQSHTNASVFDNRFSTFACSGASTTCSFLWHNNTQEASNFIDQLLANEESLNWTHYHISTLCQQKEDMQVLGKSSVKMGRRPKKGSSVSLIKGQWTEEEDSLILRSKDNWSEEEERILVEMHAKMGNRWAQIAKRIPGRTENAIKNHWNATKRKLNSKRKNKKTASSNGKPQSSILQNYITQTSSTTIISDSDPAVTKQSHLQLSDSITNDNFSSPLIADHPYEDDELLFMQQLFKDNQTQRQPLVPDQNGFIHSNAKPNSYNNVYLDESLILRKTPPTPTINSDHVYLSHLLNGTATSSLCYNYGIQYQNMDLQLEDQNSSDGKKEMDLIELVYSAQFFH. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03901 384 PANTHER MYB PROTEIN-RELATED 137 216 - -
Seca4g03901 384 Gene3D - 152 220 - -
Seca4g03901 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 199 IPR017930 -
Seca4g03901 384 SMART sant 149 197 IPR001005 -
Seca4g03901 384 Pfam Myb-like DNA-binding domain 150 192 IPR001005 -
Seca4g03901 384 ProSiteProfiles Myb-like domain profile. 150 195 IPR001005 -
Seca4g03901 384 SUPERFAMILY Homeodomain-like 149 202 IPR009057 -
Seca4g03901 384 CDD SANT 152 195 IPR001005 -
Seca4g03901 384 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03901 Seca-Chr4 68626528 68628387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03901 30 377 MYB Transcription Factor Family AT5G58850 31.368 8.45e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g03901 Myb_DNA-binding 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03901 K09422 - gmx:100786295 292.352