Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03898 ATGGCGAAGACACTGATTTCGTCTCCATCATTCATCGGCACGCCGCTCCCTTCTCTCCCTCGTCAACACTTTCCCCACCGCACCAGGCTAGTCACTACCAAGGTCCACTTCAGCTTCCACCAAATCCCCCCAATTCAATCCTTAAACCATTCACTTGACTTTGCCGGAATCGCCGCCAGAGCTGAAGGCCTTCTCTACACGCTTGCCGACGCCACCGTTGCTACGGATTCCGCTACTTCCGCCGATGCCGCAGTACAGAAGAATGGAGGCTGGTTCGGCTTCATCTCCGAAGGCATGGAGTTTGTTCTTAAGGTGTTAAAGGATGGCCTCTCTGCCGTGCATGTGCCTTACGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAAGCCGCTACACTTCCCTTGACAAAGCAACAGGTCGAATCAACACTGGCTATGCAAAATCTTCAACCGAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGAAAGAATACAACTTGAGACTTCAAGGCTATATAGGCAGGCTGGGGTTAACCCTTTGGCAGGTTGTTTACCAACTTTGGCTACGATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGGACTGTTAACAGAAGGCTTCTTGTGGATCCCCTCTCTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGATCTGGAATTTCTTGGCTTTTTCCATTTGTGGATGGTCATCCACCTCTGGGTTGGCAGGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTTGTTAGTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGAACGATCCTACTCAAAAGAATACACTCCTTATTTTCAAGTTTCTCCCACTCATGATCGGTTACTTCTCACTGTCTGTCCCATCAGGACTAACAATTTACTGGTTTACAAACAATGTCTTGAGCACAGCTCAACAAGTATGGTTGCGTAAATTAGGAGGTGCAAATCCTGTTGTGAATGAAAATGCTAGTGGAATTATTACTGCAGGACGGGCTAAAAGATCAGCTTCTCAGCCTGCAAGGTCTGGTGAAAGGTTAGTGTATTATGGTAAGTTTAAGCAGTTGAAAGAAGAGGAGAAGAAAAAATTAAACAAGGCACTGCCAGTGGAGGAACTCCAACCTCTGGCTTCTGCTTCTGCTTCTGATGATGGATTGGATGTAGAGAGCGACAACAAGGAAGTTGCAGAAGAAGCATATGCTTCTAAAGTTAGCGAAGAGGTTCAAAGTTTTTCTAGGGACAGGAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAA 1341 0.4571 MAKTLISSPSFIGTPLPSLPRQHFPHRTRLVTTKVHFSFHQIPPIQSLNHSLDFAGIAARAEGLLYTLADATVATDSATSADAAVQKNGGWFGFISEGMEFVLKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGANPVVNENASGIITAGRAKRSASQPARSGERLVYYGKFKQLKEEEKKKLNKALPVEELQPLASASASDDGLDVESDNKEVAEEAYASKVSEEVQSFSRDRRSKRSKRKRAV. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03898 446 CDD 5TM_YidC_Alb3 120 332 IPR047196 -
Seca4g03898 446 MobiDBLite consensus disorder prediction 406 421 - -
Seca4g03898 446 PANTHER OXA1 71 381 IPR001708 GO:0016020|GO:0032977
Seca4g03898 446 MobiDBLite consensus disorder prediction 396 446 - -
Seca4g03898 446 Pfam 60Kd inner membrane protein 119 332 IPR028055 -
Seca4g03898 446 NCBIfam membrane protein insertase YidC 119 331 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03898 Seca-Chr4 68601091 68608150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03898 22 388 Chloroplast and Mitochondria Gene Families AT2G28800 69.149 1.52e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03898 K03217 - gmx:100817173 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03898 4 68601091 68608150 Seca4g03898 4 68601091 68608150 ECH