Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03895 ATGGAGAGTAGTTCTCAGAATGAGGAAGTAGTGGAGATGGGAATGGGAGGGTCGAGTGGGATTCCAGCAAGTTCGCGATGGAACCCTACAAAAGAGCAAATAAGCATGTTAGAGAGTCTCTATAAACAGGGAATAAAGACTCCCACTGCTGAAGAGATACAACAGATAACTGCTAGGCTCAGGGTGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGAGACAGAAGCAGAAGCAAGAAAGCATCGCTTATTTCAATCGCTTCCTTCATAGGCCTCAACCCATTTTCTCTCCTCCAATTTGTCCAAACGGCCTCTGCGCACCGTATTGCATTCCTCAGGCACAGAGTGAGATTGGCTTTTATCCCCAGCATTCAAAGGTGCTTGTACCCATGGGTTTTAGGAGAAGCCCAGGTGAGAAAGTTGTGGCAAACGGTATCTGTGATGGCCCAGTGGTATATGAAGGCATGCAACAGAGGGTAACAGATTATAACTTTAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCCCTGCACCCAACTGGGATCTTGGAAGGGAAAACAACAGACCAGGTGTCTTCTATGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACATTCTGATATCAATGAAGAAGATGGCTGTCCAGAAAATCAACCCTTCTTTGACTTTTTTAATTCTGGACGAGGTTATTAA 726 0.4477 MESSSQNEEVVEMGMGGSSGIPASSRWNPTKEQISMLESLYKQGIKTPTAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQESIAYFNRFLHRPQPIFSPPICPNGLCAPYCIPQAQSEIGFYPQHSKVLVPMGFRRSPGEKVVANGICDGPVVYEGMQQRVTDYNFSYSNQETLDLFPLHPTGILEGKTTDQVSSMASVSADSSTDTHSDINEEDGCPENQPFFDFFNSGRGY. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03895 241 FunFam WUSCHEL-related homeobox 4 24 91 - -
Seca4g03895 241 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 217 IPR044555 GO:0003700|GO:0099402
Seca4g03895 241 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g03895 241 Gene3D - 24 92 - -
Seca4g03895 241 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Seca4g03895 241 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Seca4g03895 241 SUPERFAMILY Homeodomain-like 25 93 IPR009057 -
Seca4g03895 241 CDD homeodomain 26 86 IPR001356 GO:0003677
Seca4g03895 241 SMART HOX_1 22 89 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03895 Seca-Chr4 68542052 68543703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03895 18 238 Wox Gene Family AT5G59340 42.913 4.34e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca4g03895 Homeodomain 8.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03895 - - pvu:PHAVU_011G064900g 364.77