Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03892 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCAGCACCAGCAACCAACTCATCATCACCATCATCATCAAGCAAATGGCAGTGAGCTTCTTCCACCTTTGCCTCCTCAAGTTGGAGGTGGTGGAAGCAGTGGTGGTTCAATCAGGCCAGGGTCCATGGCAGATCGAGCTCGGTTAGCTAAGATTCCACCTCCTGAAGCAGCTTTAAAGTGTCCACGTTGTGATTCAACCAACACTAAATTTTGTTACTTCAATAACTACAGCCTCTCTCAACCCCGTCACTTTTGCAAGACTTGTAGGCGTTACTGGACAAGAGGTGGTGCTCTTAGAAATGTCCCTGTTGGTGGAGGGTGTAGAAGAAACAAGAAGAACAAAAGAAGCCGCTCAAAATCTCCTGCAAATACATCTCATGACAAACAACAAACACTCTCAACAAATTCTTCAACTGCAGCAGCAGCAACCACTCATGAGCTAATTGGTCAGTTACCACAACCAACTAACTTACCCTTCATGGCCTCTCTTCAGAATCTGAACCGTTATTCTGTTGGAAATATGGGCCTTGGTTTGCGTGAGATTCAAGGACAGACAACAGATCACATGGGGTTTCAAATTGCTAACAGTAATTCTGTTAGTGGTGTGGATCAGTGGCGGTTACAGCAATTTCCTTTCTTGAACGGTTTTGAATCAGGTTCAGGTGGTTCGTTCCCTTTTCAAAGTGAAGGTGAAGGGTTGGTTGGAGATATAGGTACAAGTAATAATAGGGTTACTCAACTGCCATCAGTTAAGATGGAAGAAAATGGAGCTTTGAATTTGACAAGAGCACCTCTTGGTGGTACTGTCTCAGAACATAACCAATTTTATTCATGGAGTGATATGTCAGGTCTTGCCTCTAATTCTTCCACTACTCATCTCTTGTAA 930 0.4355 MVFSSIPVYVDPPNWQHQQPTHHHHHHQANGSELLPPLPPQVGGGGSSGGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPANTSHDKQQTLSTNSSTAAAATTHELIGQLPQPTNLPFMASLQNLNRYSVGNMGLGLREIQGQTTDHMGFQIANSNSVSGVDQWRLQQFPFLNGFESGSGGSFPFQSEGEGLVGDIGTSNNRVTQLPSVKMEENGALNLTRAPLGGTVSEHNQFYSWSDMSGLASNSSTTHLL. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03892 309 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Seca4g03892 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 215 IPR045174 GO:0003700|GO:0006355
Seca4g03892 309 MobiDBLite consensus disorder prediction 117 156 - -
Seca4g03892 309 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Seca4g03892 309 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Seca4g03892 309 MobiDBLite consensus disorder prediction 13 56 - -
Seca4g03892 309 MobiDBLite consensus disorder prediction 138 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03892 Seca-Chr4 68450102 68451579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03892 39 308 C2C2-Dof Transcription Factor Family AT3G55370 43.189 1.35e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g03892 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03892 - - gmx:100816635 382.104