Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03891 ATGGAGGATGAGAAAGTAGGTGCTGTGATTGACTTGGTGAATGAGATAGCTGCTATTTCAGACTTTAGGCCTATGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGTTGATCCCGTTGTTCGAGGAGATTAGGGACATGAAAGATGCAATCCCTGAGGACACTTCTAAAGGTATACTTGCCTTCAAGGAAGCTCTTGAATCCGCTAGAGAACTCCTCAGATTCGGAAGTGAAGGCAGCAAGATTTACATGCTTCTGGAGAGGGACCAAATTATGAATAAATTCTATGAGGTGACAGCTCAGTTGGAACAAGCGTTGGATGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAGGAGCAGGTTGAACTGGTTCTTACCCAGTTCAGAAGAGCCAAAGGGAGGGTTGATGAACCAGATGCCAAGTTGTATGAGAATATGTTGTCCCTTTACAACAATAGCAGTGATGCAACTACAGATCCGGCTGTTCTAAGTCGATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGAGATCCAGGGGGGCGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATTATGTACAAACAGAAAACCTAGTCAAGGATGATAATGTAGGAGGAAAAGGCCTTTCTTCAAGAGTTTCTAGACCAGGGTCAAATGAAAAGAATCATCAGGCCCCTGTTATCCCTAATGATTTTCGATGTCCTATTTCCCTGGAATTGATGAGGGACCCTGTCATAGTTTCAACGGGACAGCAGACTTATGAGCGTTCTTATATTGAGAAGTGGTTGCAAGCCGGGCACGGGACATGCCCAAAAACACAGCAGAGTCTCACTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATTGAGCAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCTCAACCTAGTAAATCAGCATCAGCTTGCTCCCCAGCCGAGAGAAGCAAGATTGAAAATCTTCTCCAAAGGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCCGCAGGTGAGATCCGTCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCCTGTCCGTGCCTGACTCCCGCACTCAAGAGCATGCTGTGACAGCACTTCTTAATCTTTCGATATATGAAAATAACAAAGGAAGCATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTCCATGTGTTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACGCTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCTTTAGGAGCCATACCACCTCTAGTGACACTGCTGAGTGAGGGCACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAATAAGGGCTGGTGTTATTCCCACACTGATGGGACTGCTTACAGAACCTAGTGGAGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGTCTAGTCATCCTGAAGGGAAAGCTACCATTGGTGCTGCAGATGCAGTGCCGGTTTTGGTAGAGTTTATTGGGAATGAATCCCCAAGGAACAAAGAGAACGCAGCTGCTGTTTTAGTGCACCTTTGTTCTGGGGATCAACAATATATAGCACAGGCCCAAGAGCTAGGGGTGATGGGTCCATTGTTGGAACTGGCTCAAAATGGTACAGACAGAGGAAAAAGAAAGGCAGCACAATTGATAGAGCGTATGAACAGGTTCCTTGAGCAGCAGCAGCAGCAGCGGGAGGAGGAAATTCAAACACAGACTGAAGTTCAAGCTCAGAACGAGGATATCCAACCACCTTTGACTACTAACCTTGATGATACCTGA 2001 0.4568 MEDEKVGAVIDLVNEIAAISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDAIPEDTSKGILAFKEALESARELLRFGSEGSKIYMLLERDQIMNKFYEVTAQLEQALDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYENMLSLYNNSSDATTDPAVLSRLAEKLQLMGIADLTQESLALHEMVAASGGDPGGRIEKMSMLLKKIKDYVQTENLVKDDNVGGKGLSSRVSRPGSNEKNHQAPVIPNDFRCPISLELMRDPVIVSTGQQTYERSYIEKWLQAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSSSQPSKSASACSPAERSKIENLLQRLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLMGLLTEPSGGMVDEALAILAILSSHPEGKATIGAADAVPVLVEFIGNESPRNKENAAAVLVHLCSGDQQYIAQAQELGVMGPLLELAQNGTDRGKRKAAQLIERMNRFLEQQQQQREEEIQTQTEVQAQNEDIQPPLTTNLDDT. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03891 666 MobiDBLite consensus disorder prediction 637 666 - -
Seca4g03891 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 329 IPR013083 -
Seca4g03891 666 SMART Ubox_2 258 322 IPR003613 GO:0004842|GO:0016567
Seca4g03891 666 SMART arm_5 547 587 IPR000225 GO:0005515
Seca4g03891 666 SMART arm_5 383 423 IPR000225 GO:0005515
Seca4g03891 666 SMART arm_5 589 629 IPR000225 GO:0005515
Seca4g03891 666 SMART arm_5 465 505 IPR000225 GO:0005515
Seca4g03891 666 SMART arm_5 506 546 IPR000225 GO:0005515
Seca4g03891 666 SMART arm_5 424 464 IPR000225 GO:0005515
Seca4g03891 666 Gene3D - 338 661 IPR011989 -
Seca4g03891 666 MobiDBLite consensus disorder prediction 230 254 - -
Seca4g03891 666 MobiDBLite consensus disorder prediction 331 349 - -
Seca4g03891 666 Coils Coil 617 651 - -
Seca4g03891 666 Pfam Neurochondrin 518 631 IPR008709 -
Seca4g03891 666 CDD MLKL_NTD 7 135 - -
Seca4g03891 666 ProSiteProfiles U-box domain profile. 254 329 IPR003613 GO:0004842|GO:0016567
Seca4g03891 666 FunFam RING-type E3 ubiquitin transferase 530 651 - -
Seca4g03891 666 Pfam U-box domain 255 326 IPR003613 GO:0004842|GO:0016567
Seca4g03891 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Seca4g03891 666 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Seca4g03891 666 MobiDBLite consensus disorder prediction 329 349 - -
Seca4g03891 666 Gene3D - 2 115 IPR036537 GO:0007166
Seca4g03891 666 CDD RING-Ubox_PUB 256 309 IPR045210 -
Seca4g03891 666 MobiDBLite consensus disorder prediction 635 666 - -
Seca4g03891 666 FunFam RING-type E3 ubiquitin transferase 339 490 - -
Seca4g03891 666 SUPERFAMILY RING/U-box 249 332 - -
Seca4g03891 666 SUPERFAMILY ARM repeat 354 634 IPR016024 -
Seca4g03891 666 FunFam RING-type E3 ubiquitin transferase 254 329 - -
Seca4g03891 666 PANTHER U BOX DOMAIN-CONTAINING 25 630 - -
Seca4g03891 666 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Seca4g03891 666 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03891 Seca-Chr4 68435931 68441553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03891 1 666 U-box Gene Family AT3G46510 69.896 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03891 - - gmx:100812160 1093.57