Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03885 ATGGAAGAATGTGATGAGGAGGTGCACGTAGCAGTTGGGAAGTCGGTGAAGAAAGCTGCGACTTTGCTTCAATGGAGTTTTGCCCACTTTAGGAACACACATATTCGCTTACTTCATGTTTACCAACCTTCTGCTATGATCCCCACACTATTGGGAAAATTGCCAGCATCCCAGGCTGATCCTGGAGTGGTGTCTGCTTTTAGAAAGGAGGAAAGAGAACAGACCATGAGTCTTTTGGAGAAGTACTTGAGCATTTGCCGTGCAGCTAAGGTTAAGGCAAGTAGTGTCGTAGGCGAAGCTGATCAAGTCCAGAAAGGGATTATTGATTTGATTATTAAGCATAATATCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAAAAGGAATACCAGTAAAGCAAATTATGTTGCCAAAAATGCTCCTCCAATTTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTCATTCCTTGTCTCCATGCGCTCAACCTGAGACTATAGGTGCAGAAAGCTTAAGTTGTAGTTCTTTTCAATGTGATATGAATGAATTATTCCATTCAGATAATCTTCAATCAAATTCTACAAGGACAACAATAAGTACTGGTGTTGGATGTTGGGTGCAGAATGAAATAATTGATACAGAATCCACTTCTTTATCCAAATCATCCTGTTGTAATAGTCATTGTTATTCCCAAAATTCTGTTGAGAGGTATTTAGATACTCATTCAGAGGTTGAGGAAGAAACAGTTAATAATCAACTTATTGAAGCCAAAAGAGAAGCTGATGCAGCTATAGATGAGGCCTTTGCTGAGCTGTTGAAGTGTAAAAGTTTGGAAGCCAAAGCCATTGAGGCCATAAATAAGATCAATTTGTTTGAATCTGCCCATGCGCATGAAGTAAAGCTCAGAAAAGAGGCTGATGAAGCACTGAGAGCTACAGTACAGGAGCTACAGAAGTTATTGAATGAGAAAGAAGAAATTGATAATGAGCTACAAAGGACCATGAGAAGTATTTCCCTTCTAGACAGTTGTGCACAGGAAACCAACCATAGACGAGTTGAAGCTGCAGATGAACTATCATTGATTCAAGCATCCATCACAAACCTGTGGCATGAAAAGCAGCAGATCAGGCGACAGAAAATGGAAGCCCTGCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAATTGCAGCAGCTAACTGCAATGGGGTCATTGGGTTTGCTGAAGCATTGCCTGAGCTAGCAGAGTTTTCATCATCAGATCTTCAAAATGCCACATGCGACTTTTCAGAGAGCTTCAAGATTAGGCAGGGTGGGTATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTTCATCCACAAAATATGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTACTTGGTAGTCTCCAGCACCCTCATCTGTTGACTTTGCTTGGTTTCTGCTCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAACTCTCCAAGACTATCTATTCCGGAAAAGCTGTCTTCCCCCTTTAACATGGAATATCCGAGCACAATGGATTGCTGAAATTGCTAAAGCTCTCTGCTTCTTACATTCTTCCAAACCTGAAACTATTGTGCATGGTGATCTGAAGCTTGAAACTGTCCTTCTTGATTCTGCACTTAATTGCAAGATATGTGAATTTGGATTCAGCAGGCTGGTGACAGAGGAGTCACTCTACCTTCCTAGTTTCCGCTTCAGTACTGTGCCAAAGGGATCTTTTACATATACAGATCCCGAGTTTCAGAGAACTGGAATACTAACACCTAAGTCTGACATATACTCTTTTGGGCTTATTATTTTGCAACTCCTTACTGGTAGGACTCTAGTTGGATTAGTTGGTGAAGTACGCAAAGCAGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGTCGGAGAATGGGATTCTGGTGTTGCAACACGATTGGTTGAACTAGGATTGCAATGCTGCCGACAAAATAGTAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGGATCAGTTGCATGTTTCAGAAGAGCAACCTGTACCATCTTTTTTCTTGTGTCCAATCCTTCAGGTAACTGTTCTTTTTGTTCGATACGAAATAATGTATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGTTGGAAAATGGACACGAAACTTCACCCATGACTAATTTAAAATTGAGTCACCTCCATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAATGCTGGCTTTGCAAATATTGA 2388 0.4108 MEECDEEVHVAVGKSVKKAATLLQWSFAHFRNTHIRLLHVYQPSAMIPTLLGKLPASQADPGVVSAFRKEEREQTMSLLEKYLSICRAAKVKASSVVGEADQVQKGIIDLIIKHNIRKLVIGAIPENCMKVKRNTSKANYVAKNAPPICEIWFIYKGKHIWTREASETPHSLSPCAQPETIGAESLSCSSFQCDMNELFHSDNLQSNSTRTTISTGVGCWVQNEIIDTESTSLSKSSCCNSHCYSQNSVERYLDTHSEVEEETVNNQLIEAKREADAAIDEAFAELLKCKSLEAKAIEAINKINLFESAHAHEVKLRKEADEALRATVQELQKLLNEKEEIDNELQRTMRSISLLDSCAQETNHRRVEAADELSLIQASITNLWHEKQQIRRQKMEALRWLERWKSRGQIAAANCNGVIGFAEALPELAEFSSSDLQNATCDFSESFKIRQGGYGSIYKGEMLGRTVAIRKLHPQNMQGPAEFHQEVQVLGSLQHPHLLTLLGFCSEAWSLVYEYLPNGTLQDYLFRKSCLPPLTWNIRAQWIAEIAKALCFLHSSKPETIVHGDLKLETVLLDSALNCKICEFGFSRLVTEESLYLPSFRFSTVPKGSFTYTDPEFQRTGILTPKSDIYSFGLIILQLLTGRTLVGLVGEVRKAVSCGKLSSILDSSVGEWDSGVATRLVELGLQCCRQNSRDRPELTPSLVRELDQLHVSEEQPVPSFFLCPILQVTVLFVRYEIMYDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLSHLHLTPNHALRLAIQCWLCKY. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03885 795 Coils Coil 261 285 - -
Seca4g03885 795 SUPERFAMILY Protein kinase-like (PK-like) 427 699 IPR011009 -
Seca4g03885 795 ProSiteProfiles Protein kinase domain profile. 443 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03885 795 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 146 - -
Seca4g03885 795 SUPERFAMILY RING/U-box 714 794 - -
Seca4g03885 795 Gene3D HUPs 9 153 IPR014729 -
Seca4g03885 795 Coils Coil 317 351 - -
Seca4g03885 795 Pfam Protein tyrosine and serine/threonine kinase 448 699 IPR001245 GO:0004672|GO:0006468
Seca4g03885 795 Gene3D Transferase(Phosphotransferase) domain 1 516 717 - -
Seca4g03885 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 795 IPR013083 -
Seca4g03885 795 SMART Ubox_2 720 791 IPR003613 GO:0004842|GO:0016567
Seca4g03885 795 PANTHER OS02G0152300 PROTEIN 7 789 - -
Seca4g03885 795 ProSiteProfiles U-box domain profile. 736 795 IPR003613 GO:0004842|GO:0016567
Seca4g03885 795 Gene3D Phosphorylase Kinase; domain 1 420 515 - -
Seca4g03885 795 CDD RING-Ubox_WDSUB1-like 718 781 - -
Seca4g03885 795 Pfam U-box domain 717 794 IPR003613 GO:0004842|GO:0016567
Seca4g03885 795 CDD STK_N 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03885 Seca-Chr4 68305798 68311714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03885 5 792 U-box Gene Family AT2G45910 36.420 2.44e-159 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g03885 PK_Tyr_Ser-Thr 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03885 - - gmx:100799032 1202.96