Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03878 ATGGGAGTTTGTTTGAGCCTCCAACTTAAAGCTGAGAGCCCAATTAACACTGGGTTAAGTTCAAAGTATGTGAGTGCGGATGCAAAAGATCTCAGTACACCATGTATTAAGGTTGCTGATGACCTCAGCAGCCAAAGTAGTGAGGCCTCAGTGGATTCAGTGCCTCAGACTCCCCCAAGTGTGGGTGAGATCTTGCAGCCATCCAACCTGAAGAGCTTTACTTTGACAGAACTTAAGGCTGCCACCAGAAATTTCCGTGCAAGTGGTTTTGGATCTGTTTTTAAGGGATGGATTGATGAACACTCACTTTCTGCTGCCAAACCTGGCACTGGCATTGTTGTTGCTGTCAAAAGACTTAACCAAGATGGCTTCCAAGGTCACCAGGAGTGGATGGCAAAGCATGGTATAATTCAAGAAGCAAATCTCGAGGGTGAAGTCAGCTATCTAGGACAGCTTTCTCATCCTCATCTAGTGAAATTGATTGGTTATTGCCTTGAAGATGGAAACCGCCTTCTGGTCTATGAATTCATGCCTCGTGGCAGCTTGGAGAATCACTTGTTCATGAGAGGATCCTATTTTCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTGGCTCTTGGTGCTGCCAAAGGCCTTGCATTTCTTCACAGTGCGGAAACACAAGTGATATACCGGGATTTCAAGACTTCAAATGTCTTGCTAGATTCACATTATAATGCAAAACTTTCTGATCTTGGGCTGGCAAAGGATGAACCAACAGGTGAAAAAAGTCATGTCCCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATACCTATCCACTGGTAATGTCACTGCTAAGAGTGATGTGTATAGCTTTGGAGTTTTCCTATTGGAAATATTGTCAGGGAGGCGGGCTATTGACAAGAATAGGCCATTAGGACAACACAATTTGGTGGAATGGGCTAAGCCTTACTTAGGCAACAAGCGTAAGATTTTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGAGTTAGATGAGGCCTATAAGGTAGCTACTCTCTCCCTCCAATGCCTTTCAACAGAAGCCAAATCGAGACCAGACATGGATGAGGTTGTTACAATTTTGGAGCAGCTGCAGGCTCCCCATGTAAATAGAGGCAAACAAAATTGTTCTCGTAGGAAAAGTGCTGATGATGTTATCCATCCTAGAACCGCCACAGCTTATCGCCGACCGTCTGCTTCGTCCCTCTTACCATGA 1251 0.4532 MGVCLSLQLKAESPINTGLSSKYVSADAKDLSTPCIKVADDLSSQSSEASVDSVPQTPPSVGEILQPSNLKSFTLTELKAATRNFRASGFGSVFKGWIDEHSLSAAKPGTGIVVAVKRLNQDGFQGHQEWMAKHGIIQEANLEGEVSYLGQLSHPHLVKLIGYCLEDGNRLLVYEFMPRGSLENHLFMRGSYFQPLSWSLRLKVALGAAKGLAFLHSAETQVIYRDFKTSNVLLDSHYNAKLSDLGLAKDEPTGEKSHVPTRVMGTYGYAAPEYLSTGNVTAKSDVYSFGVFLLEILSGRRAIDKNRPLGQHNLVEWAKPYLGNKRKILRVLDNRLEGQYELDEAYKVATLSLQCLSTEAKSRPDMDEVVTILEQLQAPHVNRGKQNCSRRKSADDVIHPRTATAYRRPSASSLLP. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03878 416 Pfam Protein tyrosine and serine/threonine kinase 89 372 IPR001245 GO:0004672|GO:0006468
Seca4g03878 416 MobiDBLite consensus disorder prediction 381 416 - -
Seca4g03878 416 PANTHER OS01G0588500 PROTEIN-RELATED 49 377 - -
Seca4g03878 416 Gene3D Phosphorylase Kinase; domain 1 63 176 - -
Seca4g03878 416 SUPERFAMILY Protein kinase-like (PK-like) 57 373 IPR011009 -
Seca4g03878 416 ProSiteProfiles Protein kinase domain profile. 79 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03878 416 FunFam Serine/threonine-protein kinase BIK1 52 176 - -
Seca4g03878 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Seca4g03878 416 FunFam Serine/threonine-protein kinase PBS1 177 392 - -
Seca4g03878 416 MobiDBLite consensus disorder prediction 388 402 - -
Seca4g03878 416 Gene3D Transferase(Phosphotransferase) domain 1 177 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03878 Seca-Chr4 68215314 68218308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03878 71 373 Glycoside Hydrolase AT3G07070 47.097 1.45e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g03878 PK_Tyr_Ser-Thr 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03878 - - gmx:100798404 572.392